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Nucleic Acids Research|April 26, 2005
TM-align: a protein structure alignment algorithm based on the TM-scoreYang Zhang, Jeffrey SkolnickJournal of Chemical Information and Modeling|December 18, 2012
FINDSITE(comb): a threading/structure-based, proteomic-scale virtual ligand screening approachHongyi Zhou, Jeffrey SkolnickMolecular Pharmaceutics|May 12, 2012
FINDSITE(X): a structure-based, small molecule virtual screening approach with application to all identified human GPCRsHongyi Zhou, Jeffrey SkolnickJournal of Computational Chemistry|March 27, 2002
Docking of small ligands to low-resolution and theoretically predicted receptor structuresMarek Wojciechowski, Jeffrey SkolnickJournal of Computational Chemistry|October 15, 2009
Q-Dock(LHM): Low-resolution refinement for ligand comparative modelingMichal Brylinski, Jeffrey SkolnickNucleic Acids Research|June 3, 2008
DBD-Hunter: a knowledge-based method for the prediction of DNA-protein interactionsMu Gao, Jeffrey SkolnickProteins|March 30, 2004
Microbial genomes have over 72% structure assignment by the threading algorithm PROSPECTOR_QDaisuke Kihara, Jeffrey SkolnickBiophysical Journal|October 19, 2011
GOAP: a generalized orientation-dependent, all-atom statistical potential for protein structure predictionHongyi Zhou, Jeffrey SkolnickThe Journal of Physical Chemistry. B|October 18, 2016
Why Is There a Glass Ceiling for Threading Based Protein Structure Prediction Methods?Jeffrey Skolnick, Hongyi ZhouThe Journal of Physical Chemistry. B|August 31, 2022
Implications of the Essential Role of Small Molecule Ligand Binding Pockets in Protein-Protein InteractionsJeffrey Skolnick, Hongyi ZhouPageof 107