Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Filters

Narutoshi Kamiya

Showing results (11-20 of 62) with videos related to

Pageof 7
Sort By:
Proteins|July 20, 2007
Protein-inhibitor flexible docking by a multicanonical sampling: native complex structure with the lowest free energy and a free-energy barrier distinguishing the native complex from the othersNarutoshi Kamiya, Yasushige Yonezawa, Haruki Nakamura, et al.
Plos One|October 15, 2013
Molecular dynamics simulations of double-stranded DNA in an explicit solvent model with the zero-dipole summation methodTakamasa Arakawa, Narutoshi Kamiya, Haruki Nakamura, et al.
The Journal of Chemical Physics|August 17, 2012
Simple and accurate scheme to compute electrostatic interaction: zero-dipole summation technique for molecular system and application to bulk waterIkuo Fukuda, Narutoshi Kamiya, Yasushige Yonezawa, et al.
Proteins|November 24, 2004
Rational discovery of a novel interface for a coactivator in the peroxisome proliferator-activated receptor gamma: theoretical implications of impairment in type 2 diabetes mellitusTakuma Shiraki, Takashi S Kodama, Hisato Jingami, et al.
Scientific Reports|January 31, 2020
Mutual population-shift driven antibody-peptide binding elucidated by molecular dynamics simulationsGert-Jan Bekker, Ikuo Fukuda, Junichi Higo, et al.
The Journal of Physical Chemistry. B|April 19, 2007
Folding of the 25 residue Abeta(12-36) peptide in TFE/water: temperature-dependent transition from a funneled free-energy landscape to a rugged oneNarutoshi Kamiya, Daisuke Mitomo, Joan-Emma Shea, et al.
ACS Omega|January 29, 2024
Binding Mechanism of Riboswitch to Natural Ligand Elucidated by McMD-Based Dynamic Docking SimulationsGert-Jan Bekker, Yoshifumi Fukunishi, Junichi Higo, et al.
Journal of Chemical Theory and Computation|October 22, 2025
Assessment of RNA Force Fields for Dynamic Docking of Small Molecules Using Multicanonical MD SimulationsGert-Jan Bekker, Yoshifumi Fukunishi, Junichi Higo, et al.
Proceedings of the National Academy of Sciences of the United States of America|February 28, 2002
Structural views of the ligand-binding cores of a metabotropic glutamate receptor complexed with an antagonist and both glutamate and Gd3+Daisuke Tsuchiya, Naoki Kunishima, Narutoshi Kamiya, et al.
Journal of Chemical Theory and Computation|November 27, 2015
Free Energy Landscapes of Alanine Dipeptide in Explicit Water Reproduced by the Force-Switching Wolf MethodYasushige Yonezawa, Ikuo Fukuda, Narutoshi Kamiya, et al.
Pageof 7

Showing results (11-20 of 62) with videos related to

Sort By:
Pageof 7
Proteins|July 20, 2007
Protein-inhibitor flexible docking by a multicanonical sampling: native complex structure with the lowest free energy and a free-energy barrier distinguishing the native complex from the othersNarutoshi Kamiya, Yasushige Yonezawa, Haruki Nakamura, et al.
Plos One|October 15, 2013
Molecular dynamics simulations of double-stranded DNA in an explicit solvent model with the zero-dipole summation methodTakamasa Arakawa, Narutoshi Kamiya, Haruki Nakamura, et al.
The Journal of Chemical Physics|August 17, 2012
Simple and accurate scheme to compute electrostatic interaction: zero-dipole summation technique for molecular system and application to bulk waterIkuo Fukuda, Narutoshi Kamiya, Yasushige Yonezawa, et al.
Proteins|November 24, 2004
Rational discovery of a novel interface for a coactivator in the peroxisome proliferator-activated receptor gamma: theoretical implications of impairment in type 2 diabetes mellitusTakuma Shiraki, Takashi S Kodama, Hisato Jingami, et al.
Scientific Reports|January 31, 2020
Mutual population-shift driven antibody-peptide binding elucidated by molecular dynamics simulationsGert-Jan Bekker, Ikuo Fukuda, Junichi Higo, et al.
The Journal of Physical Chemistry. B|April 19, 2007
Folding of the 25 residue Abeta(12-36) peptide in TFE/water: temperature-dependent transition from a funneled free-energy landscape to a rugged oneNarutoshi Kamiya, Daisuke Mitomo, Joan-Emma Shea, et al.
ACS Omega|January 29, 2024
Binding Mechanism of Riboswitch to Natural Ligand Elucidated by McMD-Based Dynamic Docking SimulationsGert-Jan Bekker, Yoshifumi Fukunishi, Junichi Higo, et al.
Journal of Chemical Theory and Computation|October 22, 2025
Assessment of RNA Force Fields for Dynamic Docking of Small Molecules Using Multicanonical MD SimulationsGert-Jan Bekker, Yoshifumi Fukunishi, Junichi Higo, et al.
Proceedings of the National Academy of Sciences of the United States of America|February 28, 2002
Structural views of the ligand-binding cores of a metabotropic glutamate receptor complexed with an antagonist and both glutamate and Gd3+Daisuke Tsuchiya, Naoki Kunishima, Narutoshi Kamiya, et al.
Journal of Chemical Theory and Computation|November 27, 2015
Free Energy Landscapes of Alanine Dipeptide in Explicit Water Reproduced by the Force-Switching Wolf MethodYasushige Yonezawa, Ikuo Fukuda, Narutoshi Kamiya, et al.
Pageof 7