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Methods in Enzymology
|
February 13, 2021
Cutinases from thermophilic bacteria (actinomycetes): From identification to functional and structural characterization
Masayuki Oda, Nobutaka Numoto, Gert-Jan Bekker, et al.
Scientific Reports
|
March 4, 2021
Cryptic-site binding mechanism of medium-sized Bcl-xL inhibiting compounds elucidated by McMD-based dynamic docking simulations
Gert-Jan Bekker, Ikuo Fukuda, Junichi Higo, et al.
Protein Science : a Publication of the Protein Society
|
July 28, 2007
Simulation study on the disordered state of an Alzheimer's beta amyloid peptide Abeta(12 36) in water consisting of random-structural, beta-structural, and helical clusters
Jinzen Ikebe, Narutoshi Kamiya, Jun-Ichi Ito, et al.
Journal of Computational Chemistry
|
April 9, 2020
Exhaustive search of the configurational space of heat-shock protein 90 with its inhibitor by multicanonical molecular dynamics based dynamic docking
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, et al.
Communications Biology
|
March 30, 2023
Mutual induced-fit mechanism drives binding between intrinsically disordered Bim and cryptic binding site of Bcl-xL
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, et al.
Plos One
|
March 15, 2014
Specific non-local interactions are not necessary for recovering native protein dynamics
Bhaskar Dasgupta, Kota Kasahara, Narutoshi Kamiya, et al.
The Journal of Physical Chemistry. B
|
February 28, 2019
Dynamic Docking of a Medium-Sized Molecule to Its Receptor by Multicanonical MD Simulations
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, et al.
Journal of Chemical Information and Modeling
|
May 16, 2024
Binding Mechanism between Platelet Glycoprotein and Cyclic Peptide Elucidated by McMD-Based Dynamic Docking
Gert-Jan Bekker, Kanji Oshima, Mitsugu Araki, et al.
Biophysics and Physicobiology
|
February 12, 2024
Binding free-energy landscapes of small molecule binder and non-binder to FMN riboswitch: All-atom molecular dynamics
Junichi Higo, Gert-Jan Bekker, Narutoshi Kamiya, et al.
Biochimica Et Biophysica Acta. Proteins and Proteomics
|
December 17, 2017
Structural and thermodynamic characterization of endo-1,3-β-glucanase: Insights into the substrate recognition mechanism
Masayuki Oda, Satomi Inaba, Narutoshi Kamiya, et al.
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Showing results (21-30 of 62) with videos related to
Sort By:
Page
of 7
Methods in Enzymology
|
February 13, 2021
Cutinases from thermophilic bacteria (actinomycetes): From identification to functional and structural characterization
Masayuki Oda, Nobutaka Numoto, Gert-Jan Bekker, et al.
Scientific Reports
|
March 4, 2021
Cryptic-site binding mechanism of medium-sized Bcl-xL inhibiting compounds elucidated by McMD-based dynamic docking simulations
Gert-Jan Bekker, Ikuo Fukuda, Junichi Higo, et al.
Protein Science : a Publication of the Protein Society
|
July 28, 2007
Simulation study on the disordered state of an Alzheimer's beta amyloid peptide Abeta(12 36) in water consisting of random-structural, beta-structural, and helical clusters
Jinzen Ikebe, Narutoshi Kamiya, Jun-Ichi Ito, et al.
Journal of Computational Chemistry
|
April 9, 2020
Exhaustive search of the configurational space of heat-shock protein 90 with its inhibitor by multicanonical molecular dynamics based dynamic docking
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, et al.
Communications Biology
|
March 30, 2023
Mutual induced-fit mechanism drives binding between intrinsically disordered Bim and cryptic binding site of Bcl-xL
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, et al.
Plos One
|
March 15, 2014
Specific non-local interactions are not necessary for recovering native protein dynamics
Bhaskar Dasgupta, Kota Kasahara, Narutoshi Kamiya, et al.
The Journal of Physical Chemistry. B
|
February 28, 2019
Dynamic Docking of a Medium-Sized Molecule to Its Receptor by Multicanonical MD Simulations
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, et al.
Journal of Chemical Information and Modeling
|
May 16, 2024
Binding Mechanism between Platelet Glycoprotein and Cyclic Peptide Elucidated by McMD-Based Dynamic Docking
Gert-Jan Bekker, Kanji Oshima, Mitsugu Araki, et al.
Biophysics and Physicobiology
|
February 12, 2024
Binding free-energy landscapes of small molecule binder and non-binder to FMN riboswitch: All-atom molecular dynamics
Junichi Higo, Gert-Jan Bekker, Narutoshi Kamiya, et al.
Biochimica Et Biophysica Acta. Proteins and Proteomics
|
December 17, 2017
Structural and thermodynamic characterization of endo-1,3-β-glucanase: Insights into the substrate recognition mechanism
Masayuki Oda, Satomi Inaba, Narutoshi Kamiya, et al.
Page
of 7