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Journal of Molecular Biology|June 6, 2022
EvoRator: Prediction of Residue-level Evolutionary Rates from Protein Structures Using Machine LearningNatan Nagar, Nir Ben Tal, Tal PupkoJournal of Molecular Biology|June 25, 2023
EvoRator2: Predicting Site-specific Amino Acid Substitutions Based on Protein Structural Information Using Deep LearningNatan Nagar, Jérôme Tubiana, Gil Loewenthal, et al.Molecular Biology and Evolution|June 18, 2004
Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superiorItay Mayrose, Dan Graur, Nir Ben-Tal, et al.Proteins|December 23, 2004
The ConSurf-HSSP database: the mapping of evolutionary conservation among homologs onto PDB structuresFabian Glaser, Yossi Rosenberg, Amit Kessel, et al.Nucleic Acids Research|May 19, 2010
ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acidsHaim Ashkenazy, Elana Erez, Eric Martz, et al.Bioinformatics (Oxford, England)|June 18, 2005
In silico identification of functional regions in proteinsGuy Nimrod, Fabian Glaser, David Steinberg, et al.Bioinformatics (Oxford, England)|August 10, 2002
Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologuesTal Pupko, Rachel E Bell, Itay Mayrose, et al.Open Biology|December 14, 2022
The evolutionary dynamics that retain long neutral genomic sequences in face of indel deletion bias: a model and its application to human intronsGil Loewenthal, Elya Wygoda, Natan Nagar, et al.Nucleic Acids Research|May 12, 2016
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromoleculesHaim Ashkenazy, Shiran Abadi, Eric Martz, et al.Nucleic Acids Research|June 28, 2005
ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structuresMeytal Landau, Itay Mayrose, Yossi Rosenberg, et al.Pageof 28