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BMC Bioinformatics|September 28, 2022
Neural representations of cryo-EM maps and a graph-based interpretationNathan Ranno, Dong SiBiomed Research International|February 7, 2017
Modeling Beta-Traces for Beta-Barrels from Cryo-EM Density MapsDong Si, Jing HeJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|October 17, 2017
Beta-Barrel Detection for Medium Resolution Cryo-Electron Microscopy Density Maps Using Genetic Algorithms and Ray TracingAlbert Ng, Dong SiStructure (London, England : 1993)|October 14, 2014
Tracing beta strands using StrandTwister from cryo-EM density maps at medium resolutionsDong Si, Jing HeAnnual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference|January 9, 2015
Combining image processing and modeling to generate traces of beta-strands from cryo-EM density images of beta-barrelsDong Si, Jing HeComputational Biology and Chemistry|June 3, 2025
Beyond current boundaries: Integrating deep learning and AlphaFold for enhanced protein structure prediction from low-resolution cryo-EM mapsXin Ma, Dong SiAnnual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference|November 17, 2018
Cancer Type Prediction and Classification Based on RNA-sequencing DataYi-Hsin Hsu, Dong SiAnnual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference|November 17, 2018
Parkinson's Disease Classification of mPower Walking Activity ParticipantsBenjamin Pittman, Reza Hosseini Ghomi, Dong SiProceedings of the National Academy of Sciences of the United States of America|December 28, 2020
DeepTracer for fast de novo cryo-EM protein structure modeling and special studies on CoV-related complexesJonas Pfab, Nhut Minh Phan, Dong SiAnnual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference|November 17, 2018
Machine Learning of Spatiotemporal Bursting Behavior in Developing Neural NetworksJewel YunHsuan Lee, Michael Stiber, Dong SiPageof 6