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Bioinformatics (Oxford, England)|December 19, 2022
Integrative chromatin domain annotation through graph embedding of Hi-C dataNeda Shokraneh, Mariam Arab, Maxwell Libbrecht
Bioinformatics (Oxford, England)|June 24, 2021
VSS: variance-stabilized signals for sequencing-based genomic signalsFaezeh Bayat, Maxwell Libbrecht
Bioinformatics (Oxford, England)|December 10, 2024
VSS-Hi-C: variance-stabilized signals for chromatin contactsNeda Shokraneh Kenari, Faezeh Bayat, Maxwell W Libbrecht
Bioinformatics (Oxford, England)|April 22, 2022
Continuous chromatin state feature annotation of the human epigenomeHabib Daneshpajouh, Bowen Chen, Neda Shokraneh, et al.
Algorithms for Molecular Biology : AMB|August 11, 2021
INGOT-DR: an interpretable classifier for predicting drug resistance in M. tuberculosisHooman Zabeti, Nick Dexter, Amir Hosein Safari, et al.
Bioinformatics Advances|January 26, 2023
GlobeCorr: interactive globe-based visualization for correlation datasetsMariam Arab, Nolan Woods, Emma S Garlock, et al.
Biorxiv : the Preprint Server for Biology|July 17, 2025
GAME: Genomic API for Model EvaluationIshika Luthra, Satyam Priyadarshi, Rui Guo, et al.
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