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Structure (London, England : 1993)|March 20, 2018
Ranking Enzyme Structures in the PDB by Bound Ligand Similarity to Biological SubstratesJonathan D Tyzack, Laurent Fernando, Antonio J M Ribeiro, et al.Bioinformatics (Oxford, England)|February 14, 2019
Finding enzyme cofactors in Protein Data BankAbhik Mukhopadhyay, Neera Borkakoti, Lukáš Pravda, et al.Biophysical Reviews|January 20, 2023
Using mechanism similarity to understand enzyme evolutionAntónio J M Ribeiro, Ioannis G Riziotis, Jonathan D Tyzack, et al.Nature Methods|September 22, 2023
EzMechanism: an automated tool to propose catalytic mechanisms of enzyme reactionsAntonio J M Ribeiro, Ioannis G Riziotis, Jonathan D Tyzack, et al.The Journal of Biological Chemistry|December 5, 2019
A global analysis of function and conservation of catalytic residues in enzymesAntónio J M Ribeiro, Jonathan D Tyzack, Neera Borkakoti, et al.The FEBS Journal|November 22, 2024
Paradigms of convergent evolution in enzymesIoannis G Riziotis, Jenny C Kafas, Gabriel Ong, et al.The FEBS Journal|April 22, 2025
Measuring catalytic mechanism similarity - a new approach to study enzyme function and evolutionAntonio J M Ribeiro, Ioannis G Riziotis, Neera Borkakoti, et al.Bioinformatics (Oxford, England)|December 31, 2020
GRaSP: a graph-based residue neighborhood strategy to predict binding sitesCharles A Santana, Sabrina de A Silveira, João P A Moraes, et al.Comparative and Functional Genomics|July 17, 2008
Protein-DNA interactions: the story so far and a new method for predictionSusan Jones, Janet M ThorntonBioessays : News and Reviews in Molecular, Cellular and Developmental Biology|April 15, 2006
A bioinformatician's view of the metabolomeIrene Nobeli, Janet M ThorntonPageof 21