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Algorithms for Molecular Biology : AMB|February 11, 2014
A minimum-labeling approach for reconstructing protein networks across multiple conditionsArnon Mazza, Irit Gat-Viks, Hesso Farhan, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|April 7, 2006
Efficient algorithms for detecting signaling pathways in protein interaction networksJacob Scott, Trey Ideker, Richard M Karp, et al.Bioinformatics (Oxford, England)|September 4, 2024
Multi-modal contrastive learning of subcellular organization using DICERami Nasser, Leah V Schaffer, Trey Ideker, et al.Cancer Research|November 6, 2009
TP53 cancerous mutations exhibit selection for translation efficiencyYedael Y Waldman, Tamir Tuller, Roded Sharan, et al.Proceedings of the National Academy of Sciences of the United States of America|January 18, 2007
Transcriptional regulation of protein complexes within and across speciesKai Tan, Tomer Shlomi, Hoda Feizi, et al.Nucleic Acids Research|June 25, 2004
CREME: Cis-Regulatory Module Explorer for the human genomeRoded Sharan, Asa Ben-Hur, Gabriela G Loots, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|January 5, 2022
ScalpelSig Designs Targeted Genomic Panels from Data to Detect Activity of Mutational SignaturesNicholas Franzese, Jason Fan, Roded Sharan, et al.Plos Computational Biology|March 23, 2011
Genome-scale metabolic modeling elucidates the role of proliferative adaptation in causing the Warburg effectTomer Shlomi, Tomer Benyamini, Eyal Gottlieb, et al.Bioinformatics (Oxford, England)|July 12, 2003
CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segmentsRoded Sharan, Ivan Ovcharenko, Asa Ben-Hur, et al.Plos Computational Biology|May 17, 2011
Gene expression in the rodent brain is associated with its regional connectivityLior Wolf, Chen Goldberg, Nathan Manor, et al.Pageof 27