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NAR Genomics and Bioinformatics|January 8, 2026
PyamilySeq: exposing the fragility of conventional gene (re)clustering and prokaryotic pangenomic inference methodsNicholas J DimonacoBriefings in Bioinformatics|July 3, 2026
Genome assemblies and annotations are not static and need support for tracking their evolutionNicholas J Dimonaco, Amanda Clare, Martin VickersViruses|January 5, 2021
Computational Analysis of SARS-CoV-2 and SARS-Like Coronavirus Diversity in Human, Bat and Pangolin PopulationsNicholas J Dimonaco, Mazdak Salavati, Barbara B ShihLife Science Alliance|January 16, 2024
Accessory genes define species-specific routes to antibiotic resistanceLucy Dillon, Nicholas J Dimonaco, Christopher J CreeveyNature Communications|April 3, 2025
Lineage-specific microbial protein prediction enables large-scale exploration of protein ecology within the human gutMatthias A Schmitz, Nicholas J Dimonaco, Thomas Clavel, et al.Bioinformatics (Oxford, England)|December 7, 2021
No one tool to rule them all: prokaryotic gene prediction tool annotations are highly dependent on the organism of studyNicholas J Dimonaco, Wayne Aubrey, Kim Kenobi, et al.Nucleic Acids Research|October 28, 2023
StORF-Reporter: finding genes between genesNicholas J Dimonaco, Amanda Clare, Kim Kenobi, et al.Bioinformatics (Oxford, England)|March 8, 2021
DeepViral: prediction of novel virus-host interactions from protein sequences and infectious disease phenotypesWang Liu-Wei, Şenay Kafkas, Jun Chen, et al.Microbiome|June 13, 2026
Dietary inclusion of Asparagopsis taxiformis significantly reduces methane emissions in dairy cows by mechanistically altering vitamin B12-dependent and other methanogenesis precursor pathwaysKatie Lawther, Nicholas J Dimonaco, Paul Donnelly, et al.Journal of Animal Science and Biotechnology|August 9, 2025
Reducing crude protein content in the diet of lactating dairy cows improved nitrogen-use-efficiency and reduced N excretion in urine, whilst having no obvious effects on the rumen microbiomeAgalu W Zeleke, Nicholas J Dimonaco, Katie Lawther, et al.Pageof 2