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Plos One|April 12, 2018
Efficient minimization of multipole electrostatic potentials in torsion spaceNicholas K Bodmer, James J HavranekThe Journal of Biological Chemistry|July 31, 2010
Specificity in computational protein designJames J HavranekProceedings of the National Academy of Sciences of the United States of America|February 7, 2012
Automated selection of stabilizing mutations in designed and natural proteinsBenjamin Borgo, James J HavranekProtein Science : a Publication of the Protein Society|January 11, 2014
Motif-directed redesign of enzyme specificityBenjamin Borgo, James J HavranekProtein Science : a Publication of the Protein Society|May 28, 2009
Motif-directed flexible backbone design of functional interactionsJames J Havranek, David BakerNature Structural Biology|December 3, 2002
Automated design of specificity in molecular recognitionJames J Havranek, Pehr B HarburyQuantitative Biology (Beijing, China)|November 22, 2023
Deciphering the protein-DNA code of bacterial winged helix-turn-helix transcription factorsAdam P Joyce, James J HavranekBiophysical Journal|May 9, 2015
Molecular investigations into the mechanics of a muscle anchoring complexNicholas K Bodmer, Kelly E Theisen, Ruxandra I DimaThe Journal of Biological Chemistry|January 29, 2020
Identification of the growth factor-binding sequence in the extracellular matrix protein MAGP-1Thomas J Broekelmann, Nicholas K Bodmer, Robert P MechamJournal of Molecular Biology|October 27, 2004
A simple physical model for the prediction and design of protein-DNA interactionsJames J Havranek, Carlos M Duarte, David BakerPageof 3