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Proteins|February 16, 2026
AlphaFold2-Guided Cyclic Peptide Stabilizer Design to Target Protein-Protein InteractionsNiklas Halbwedl, Martin ZachariasComputational and Structural Biotechnology Journal|September 10, 2024
cPEPmatch Webserver: A comprehensive tool and database to aid rational design of cyclic peptides for drug discoveryBrianda L Santini, Stephanie Wendel, Niklas Halbwedl, et al.Proteins|June 28, 2005
ATTRACT: protein-protein docking in CAPRI using a reduced protein modelMartin ZachariasProteins|August 23, 2012
Combining coarse-grained nonbonded and atomistic bonded interactions for protein modelingMartin ZachariasAngewandte Chemie (International Ed. in English)|February 16, 2019
Atomic Resolution Insight into Sac7d Protein Binding to DNA and Associated Global Changes by Molecular Dynamics SimulationsMartin ZachariasProtein Science : a Publication of the Protein Society|October 14, 2021
Match_Motif: A rapid computational tool to assist in protein-protein interaction designMartin ZachariasThe Journal of Physical Chemistry. B|November 6, 2020
Base-Pairing and Base-Stacking Contributions to Double-Stranded DNA FormationMartin ZachariasJournal of Chemical Theory and Computation|December 2, 2015
Combining Elastic Network Analysis and Molecular Dynamics Simulations by Hamiltonian Replica ExchangeMartin ZachariasStructure (London, England : 1993)|March 9, 2017
Predicting Allosteric Changes from Conformational EnsemblesMartin ZachariasProtein Science : a Publication of the Protein Society|May 23, 2003
Protein-protein docking with a reduced protein model accounting for side-chain flexibilityMartin ZachariasPageof 34