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Bioinformatics (Oxford, England)|July 23, 2020
PEWO: a collection of workflows to benchmark phylogenetic placementBenjamin Linard, Nikolai Romashchenko, Fabio Pardi, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|May 19, 2023
Computing Phylo- k-MersNikolai Romashchenko, Benjamin Linard, Eric Rivals, et al.Bioinformatics (Oxford, England)|November 17, 2023
EPIK: precise and scalable evolutionary placement with informative k-mersNikolai Romashchenko, Benjamin Linard, Fabio Pardi, et al.Bioinformatics (Oxford, England)|December 17, 2020
Rapid screening and detection of inter-type viral recombinants using phylo-k-mersGuillaume E Scholz, Benjamin Linard, Nikolai Romashchenko, et al.Plos Computational Biology|July 28, 2025
Algorithms to reconstruct past indels: The deletion-only parsimony problemJordan Moutet, Eric Rivals, Fabio PardiBioinformatics (Oxford, England)|January 31, 2019
Rapid alignment-free phylogenetic identification of metagenomic sequencesBenjamin Linard, Krister Swenson, Fabio PardiBioinformatics (Oxford, England)|June 8, 2004
STAR: an algorithm to Search for Tandem Approximate RepeatsOlivier Delgrange, Eric RivalsBioinformatics (Oxford, England)|August 29, 2014
LoRDEC: accurate and efficient long read error correctionLeena Salmela, Eric RivalsJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|August 26, 2003
Comparison of minisatellitesSèverine Bérard, Eric RivalsSystematic Biology|June 15, 2007
Resource-aware taxon selection for maximizing phylogenetic diversityFabio Pardi, Nick GoldmanPageof 9