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Bioinformatics (Oxford, England)|June 25, 2017
UpSetR: an R package for the visualization of intersecting sets and their propertiesJake R Conway, Alexander Lex, Nils Gehlenborg
IEEE Transactions on Visualization and Computer Graphics|July 12, 2018
Lineage: Visualizing Multivariate Clinical Data in Genealogy GraphsCarolina Nobre, Nils Gehlenborg, Hilary Coon, et al.
JMIR Human Factors|February 3, 2025
Patient-Generated Collections for Organizing Electronic Health Record Data to Elevate Personal Meaning, Improve Actionability, and Support Patient-Health Care Provider Communication: Think-Aloud Evaluation StudyDrashko Nakikj, David Kreda, Karan Luthria, et al.
Arxiv|September 26, 2025
Uchimata: a toolkit for visualization of 3D genome structures on the web and in computational notebooksDavid Kouřil, Trevor Manz, Tereza Clarence, et al.
IEEE Transactions on Visualization and Computer Graphics|October 1, 2021
Gosling: A Grammar-based Toolkit for Scalable and Interactive Genomics Data VisualizationSehi L'Yi, Qianwen Wang, Fritz Lekschas, et al.
IEEE Transactions on Visualization and Computer Graphics|December 15, 2025
Design Space and Declarative Grammar for 3D Genomic Data VisualizationDavid Kouril, Trevor Manz, Sehi L'Yi, et al.
Bioinformatics (Oxford, England)|January 22, 2026
Uchimata: a toolkit for visualization of 3D genome structures on the web and in computational notebooksDavid Kou, Trevor Manz, Tereza Clarence, et al.
Biorxiv : the Preprint Server for Biology|May 7, 2026
SpatialQuery: scalable discovery and molecular characterization of multicellular motifs from spatial omics dataShaokun An, Mark Keller, Nils Gehlenborg, et al.
BMC Bioinformatics|September 14, 2017
Interactive visual exploration and refinement of cluster assignmentsMichael Kern, Alexander Lex, Nils Gehlenborg, et al.
IEEE Transactions on Visualization and Computer Graphics|September 11, 2015
Domino: Extracting, Comparing, and Manipulating Subsets Across Multiple Tabular DatasetsSamuel Gratzl, Nils Gehlenborg, Alexander Lex, et al.
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