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Genome Biology|October 12, 2010
Improved variant discovery through local re-alignment of short-read next-generation sequencing data using SRMANils Homer, Stanley F NelsonBMC Bioinformatics|June 26, 2010
Local alignment of generalized k-base encoded DNA sequenceNils Homer, Stanley F Nelson, Barry MerrimanBMC Bioinformatics|June 11, 2009
Local alignment of two-base encoded DNA sequenceNils Homer, Barry Merriman, Stanley F NelsonPlos One|November 13, 2009
BFAST: an alignment tool for large scale genome resequencingNils Homer, Barry Merriman, Stanley F NelsonPlos Genetics|May 17, 2018
Correction: U87MG Decoded: The Genomic Sequence of a Cytogenetically Aberrant Human Cancer Cell LineMichael James Clark, Nils Homer, Brian D O'Connor, et al.Plos Genetics|February 4, 2010
U87MG decoded: the genomic sequence of a cytogenetically aberrant human cancer cell lineMichael James Clark, Nils Homer, Brian D O'Connor, et al.Bioinformatics (Oxford, England)|July 12, 2008
Multimarker analysis and imputation of multiple platform pooling-based genome-wide association studiesNils Homer, Waibhav D Tembe, Szabolcs Szelinger, et al.BMC Genomics|January 2, 2010
Improving the efficiency of genomic loci capture using oligonucleotide arrays for high throughput resequencingHane Lee, Brian D O'Connor, Barry Merriman, et al.Plos Genetics|September 5, 2008
Resolving individuals contributing trace amounts of DNA to highly complex mixtures using high-density SNP genotyping microarraysNils Homer, Szabolcs Szelinger, Margot Redman, et al.Briefings in Bioinformatics|May 13, 2010
A survey of sequence alignment algorithms for next-generation sequencingHeng Li, Nils HomerPageof 26