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International Journal of Molecular Sciences|April 11, 2020
SAAMBE-3D: Predicting Effect of Mutations on Protein-Protein InteractionsSwagata Pahari, Gen Li, Adithya Krishna Murthy, et al.Journal of Computational Biophysics and Chemistry|October 16, 2025
PKAD-R: curated, redesigned and expanded database of experimental pKa values in proteinsAda Y Chen, Shailesh K Panday, Kaoru Ri, et al.Bioinformatics (Oxford, England)|September 1, 2020
SAAMBE-SEQ: a sequence-based method for predicting mutation effect on protein-protein binding affinityGen Li, Swagata Pahari, Adithya Krishna Murthy, et al.Journal of Molecular Biology|December 4, 2003
On the role of structural information in remote homology detection and sequence alignment: new methods using hybrid sequence profilesChristopher L Tang, Lei Xie, Ingrid Y Y Koh, et al.Plos One|November 5, 2014
Chronic Beryllium Disease: revealing the role of beryllium ion and small peptides binding to HLA-DP2Marharyta Petukh, Bohua Wu, Shannon Stefl, et al.Journal of Molecular Biology|December 8, 2005
Characterizing a partially folded intermediate of the villin headpiece domain under non-denaturing conditions: contribution of His41 to the pH-dependent stability of the N-terminal subdomainMichael J Grey, Yuefeng Tang, Emil Alexov, et al.Scientific Reports|August 17, 2017
Forces and Disease: Electrostatic force differences caused by mutations in kinesin motor domains can distinguish between disease-causing and non-disease-causing mutationsLin Li, Zhe Jia, Yunhui Peng, et al.Proteins|July 12, 2011
Developing hybrid approaches to predict pKa values of ionizable groupsShawn Witham, Kemper Talley, Lin Wang, et al.The FEBS Journal|June 5, 2007
Structural and functional consequences of single amino acid substitutions in the pyrimidine base binding pocket of Escherichia coli CMP kinaseAugustin Ofiteru, Nadia Bucurenci, Emil Alexov, et al.Human Molecular Genetics|May 23, 2013
A Y328C missense mutation in spermine synthase causes a mild form of Snyder-Robinson syndromeZhe Zhang, Joy Norris, Vera Kalscheuer, et al.Pageof 15