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Biorxiv : the Preprint Server for Biology|July 29, 2026
A model for PIP2/3 and Rnd1 effects on Plexin-B1 GAP activity on Rap1b GTPase derived from molecular dynamics simulationsNisha Bhattarai, Amita R Sahoo, Matthias BuckBiorxiv : the Preprint Server for Biology|January 9, 2026
From Dimerization to Signaling: Molecular Dynamics Insights into EphA1 and EphA2 Isoform SpecificityAmita R Sahoo, Nisha Bhattarai, Matthias BuckBiorxiv : the Preprint Server for Biology|June 4, 2025
Computation model predicts Rho GTPase function with the Plexin Transmembrane receptor GAP activity on Rap1b via dynamic allosteric changesNisha Bhattarai, Lindsay Morrison, Alexandre F Gomes, et al.Protein Science : a Publication of the Protein Society|June 23, 2025
Computational model predicts function of Rho-GTPase binding for plexin receptor GAP activity on Rap1b via dynamic allosteric changesNisha Bhattarai, Lindsay Morrison, Alexandre F Gomes, et al.International Journal of Molecular Sciences|August 27, 2021
Structural and Functional Insights into the Transmembrane Domain Association of Eph ReceptorsAmita R Sahoo, Matthias BuckCurrent Opinion in Structural Biology|December 16, 2025
Recent breakthroughs in understanding the allosteric features of Ras GTPases and their effector and regulatory protein interactions, enabling drug designNisha Bhattarai, Matthias BuckBiorxiv : the Preprint Server for Biology|January 20, 2025
Cholesterol-Dependent Dimerization and Conformational Dynamics of EphA2 Receptors: Insights from Coarse-Grained and All-Atom SimulationsAmita Rani Sahoo, Nisha Bhattarai, Matthias BuckStructure (London, England : 1993)|April 25, 2025
Cholesterol-dependent dimerization and conformational dynamics of EphA2 receptors from coarse-grained and all-atom simulationsAmita Rani Sahoo, Nisha Bhattarai, Matthias BuckStructure (London, England : 1993)|April 19, 2023
Transmembrane dimers of type 1 receptors sample alternate configurations: MD simulations using coarse grain Martini 3 versus AlphaFold2 MultimerAmita R Sahoo, Paulo C T Souza, Zhiyuan Meng, et al.Communications Biology|July 7, 2026
Macropinocytosis mediates neurotropism of Cryptococcus neoformans in a human organoid model of the blood-brain barrierAmelia B Bennett, Dylan M Lanser, Kiem Vu, et al.Pageof 15