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Bioinformatics Advances|January 13, 2025
ICoN: integration using co-attention across biological networksNure Tasnina, T M MuraliBriefings in Bioinformatics|December 31, 2025
SynVerse: a modular framework for building and evaluating deep learning-based drug synergy prediction modelsNure Tasnina, Maryam Haghani, T M MuraliPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|February 27, 2026
Provenance Tracing in Network Diffusion AlgorithmsNure Tasnina, Mark Crovella, Simon Kasif, et al.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|March 10, 2021
Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 -human interactomeMeghana Kshirsagar, Nure Tasnina, Michael D Ward, et al.Scientific Reports|February 10, 2023
A time evolving online social network generation algorithmPouyan Shirzadian, Blessy Antony, Akshaykumar G Gattani, et al.Gigascience|December 30, 2021
Interpretable network propagation with application to expanding the repertoire of human proteins that interact with SARS-CoV-2Jeffrey N Law, Kyle Akers, Nure Tasnina, et al.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|February 27, 2003
Extracting conserved gene expression motifs from gene expression dataT M Murali, Simon KasifJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|August 19, 2008
Network legos: building blocks of cellular wiring diagramsT M Murali, Corban G RiveraIEEE/ACM Transactions on Computational Biology and Bioinformatics|October 10, 2017
Pathway Analysis with Signaling HypergraphsAnna Ritz, Brendan Avent, T M MuraliPageof 7