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Proceedings of the National Academy of Sciences of the United States of America|May 18, 2005
Regulatory on/off minimization of metabolic flux changes after genetic perturbationsTomer Shlomi, Omer Berkman, Eytan Ruppin
Bioinformatics (Oxford, England)|November 18, 2010
iMAT: an integrative metabolic analysis toolHadas Zur, Eytan Ruppin, Tomer Shlomi
Molecular Systems Biology|September 9, 2010
Computational reconstruction of tissue-specific metabolic models: application to human liver metabolismLivnat Jerby, Tomer Shlomi, Eytan Ruppin
Molecular Systems Biology|April 30, 2009
Predicting metabolic biomarkers of human inborn errors of metabolismTomer Shlomi, Moran N Cabili, Eytan Ruppin
Nucleic Acids Research|December 13, 2006
Gene loss rate: a probabilistic measure for the conservation of eukaryotic genesElhanan Borenstein, Tomer Shlomi, Eytan Ruppin, et al.
Plos Computational Biology|August 29, 2006
Conservation of expression and sequence of metabolic genes is reflected by activity across metabolic statesYonatan Bilu, Tomer Shlomi, Naama Barkai, et al.
Genome Biology|April 20, 2010
Flux balance analysis accounting for metabolite dilutionTomer Benyamini, Ori Folger, Eytan Ruppin, et al.
BMC Bioinformatics|April 12, 2006
QPath: a method for querying pathways in a protein-protein interaction networkTomer Shlomi, Daniel Segal, Eytan Ruppin, et al.
Molecular Systems Biology|April 18, 2007
A genome-scale computational study of the interplay between transcriptional regulation and metabolismTomer Shlomi, Yariv Eisenberg, Roded Sharan, et al.
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