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Journal of Molecular Biology|March 13, 2001
Native topology or specific interactions: what is more important for protein folding?P Ferrara, A CaflischProceedings of the National Academy of Sciences of the United States of America|September 14, 2000
Folding simulations of a three-stranded antiparallel beta -sheet peptideP Ferrara, A CaflischProteins|March 29, 2000
Computer simulations of protein folding by targeted molecular dynamicsP Ferrara, J Apostolakis, A CaflischJournal of Molecular Graphics & Modelling|January 5, 2002
Flexibility of the murine prion protein and its Asp178Asn mutant investigated by molecular dynamics simulationsJ Gsponer, P Ferrara, A CaflischJournal of Computer-Aided Molecular Design|October 1, 1996
Computational combinatorial ligand design: application to human alpha-thrombinA CaflischCombinatorial Chemistry & High Throughput Screening|July 27, 1999
Computational ligand designJ Apostolakis, A CaflischJournal of Molecular Biology|August 9, 2001
Role of native topology investigated by multiple unfolding simulations of four SH3 domainsJ Gsponer, A CaflischThe Journal of Physical Chemistry. B|February 24, 2009
ETNA: equilibrium transitions network and Arrhenius equation for extracting folding kinetics from REMD simulationsS Muff, A CaflischThe Journal of Chemical Physics|April 2, 2009
Identification of the protein folding transition state from molecular dynamics trajectoriesS Muff, A CaflischStructure (London, England : 1993)|June 23, 1999
Structural details of urea binding to barnase: a molecular dynamics analysisA Caflisch, M KarplusPageof 29