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Journal of Chemical Information and Modeling|October 9, 2025
ParametrizANI: Fast and Accessible Dihedral Parametrization for Small MoleculesPablo R Arantes, Souvik Sinha, Giulia PalermoProceedings of the National Academy of Sciences of the United States of America|April 2, 2025
Unveiling Cas8 dynamics and regulation within a transposon-encoded Cascade-TniQ complexAmun C Patel, Souvik Sinha, Pablo R Arantes, et al.Biorxiv : the Preprint Server for Biology|July 1, 2024
Unveiling Cas8 Dynamics and Regulation within a transposon-encoded Cascade-TniQ ComplexAmun C Patel, Souvik Sinha, Pablo R Arantes, et al.Journal of Chemical Theory and Computation|March 22, 2023
Machines on Genes through the Computational MicroscopeSouvik Sinha, Chinmai Pindi, Mohd Ahsan, et al.Biorxiv : the Preprint Server for Biology|August 7, 2023
RNA-mediated Allosteric Activation in CRISPR-Cas13aSouvik Sinha, Adrian M Molina Vargas, Pablo R Arantes, et al.Nucleic Acids Research|November 30, 2023
Unveiling the RNA-mediated allosteric activation discloses functional hotspots in CRISPR-Cas13aSouvik Sinha, Adrian M Molina Vargas, Pablo R Arantes, et al.Current Opinion in Structural Biology|June 11, 2022
Dynamics and mechanisms of CRISPR-Cas9 through the lens of computational methodsAakash Saha, Pablo R Arantes, Giulia PalermoNucleic Acids Research|November 21, 2024
Dimerization of the deaminase domain and locking interactions with Cas9 boost base editing efficiency in ABE8ePablo R Arantes, Xiaoyu Chen, Souvik Sinha, et al.Biorxiv : the Preprint Server for Biology|August 7, 2023
New design strategies for ultra-specific CRISPR-Cas13a-based RNA-diagnostic tools with single-nucleotide mismatch sensitivityAdrian M Molina Vargas, Raven Osborn, Souvik Sinha, et al.Quarterly Reviews of Biophysics|December 10, 2024
Graph theory approaches for molecular dynamics simulationsAmun C Patel, Souvik Sinha, Giulia PalermoPageof 12