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Bioinformatics (Oxford, England)|June 30, 2023
Higher-order genetic interaction discovery with network-based biological priorsPaolo Pellizzoni, Giulia Muzio, Karsten BorgwardtBriefings in Bioinformatics|November 10, 2020
Biological network analysis with deep learningGiulia Muzio, Leslie O'Bray, Karsten BorgwardtJournal of Chemical Theory and Computation|February 12, 2026
Automated Discovery of Reactive Events via Hypergraph Mining of Ab Initio Atomistic SimulationsAlexandra Stan-Bernhardt, Paolo Pellizzoni, Karsten Borgwardt, et al.Bioinformatics (Oxford, England)|October 29, 2025
Endowing protein language models with structural knowledgePhilip Hartout, Dexiong Chen, Paolo Pellizzoni, et al.Bioinformatics (Oxford, England)|June 7, 2023
networkGWAS: a network-based approach to discover genetic associationsGiulia Muzio, Leslie O'Bray, Laetitia Meng-Papaxanthos, et al.Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology|July 12, 2008
Predicting phenotypic effects of gene perturbations in C. elegans using an integrated network modelKarsten BorgwardtBMC Systems Biology|May 11, 2018
Multi-target drug repositioning by bipartite block-wise sparse multi-task learningLimin Li, Xiao He, Karsten BorgwardtBioinformatics (Oxford, England)|March 13, 2018
Kernelized rank learning for personalized drug recommendationXiao He, Lukas Folkman, Karsten BorgwardtBioinformatics (Oxford, England)|June 21, 2011
ccSVM: correcting Support Vector Machines for confounding factors in biological data classificationLimin Li, Barbara Rakitsch, Karsten BorgwardtPageof 7