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Paraskevi Gkeka

Showing results (1-10 of 23) with videos related to

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The Journal of Physical Chemistry. B|December 24, 2009
Interactions of phospholipid bilayers with several classes of amphiphilic alpha-helical peptides: insights from coarse-grained molecular dynamics simulationsParaskevi Gkeka, Lev Sarkisov
The Journal of Physical Chemistry Letters|August 19, 2015
Homogeneous Hydrophobic-Hydrophilic Surface Patterns Enhance Permeation of Nanoparticles through Lipid MembranesParaskevi Gkeka, Lev Sarkisov, Panagiotis Angelikopoulos
Plos Computational Biology|December 5, 2014
Membrane partitioning of anionic, ligand-coated nanoparticles is accompanied by ligand snorkeling, local disordering, and cholesterol depletionParaskevi Gkeka, Panagiotis Angelikopoulos, Lev Sarkisov, et al.
Journal of Chemical Theory and Computation|December 29, 2021
Chasing Collective Variables Using Autoencoders and Biased TrajectoriesZineb Belkacemi, Paraskevi Gkeka, Tony Lelièvre, et al.
Journal of Chemical Theory and Computation|November 21, 2015
Free Energy Calculations Reveal the Origin of Binding Preference for Aminoadamantane Blockers of Influenza A/M2TM PoreParaskevi Gkeka, Stelios Eleftheratos, Antonios Kolocouris, et al.
The Journal of Physical Chemistry. B|October 10, 2014
Exploring a non-ATP pocket for potential allosteric modulation of PI3KαParaskevi Gkeka, Alexandra Papafotika, Savvas Christoforidis, et al.
Nanoscale|October 15, 2016
Self-assembly of anionic, ligand-coated nanoparticles in lipid membranesPanagiotis Angelikopoulos, Lev Sarkisov, Zoe Cournia, et al.
Journal of Chemical Theory and Computation|September 8, 2021
Contact Map Fingerprints of Protein-Ligand Unbinding Trajectories Reveal Mechanisms Determining Residence Times Computed from Scaled Molecular DynamicsMarc Bianciotto, Paraskevi Gkeka, Daria B Kokh, et al.
The Journal of Chemical Physics|July 11, 2023
Autoencoders for dimensionality reduction in molecular dynamics: Collective variable dimension, biasing, and transition statesZineb Belkacemi, Marc Bianciotto, Hervé Minoux, et al.
Biochimica Et Biophysica Acta|August 17, 2016
DPPC-cholesterol phase diagram using coarse-grained Molecular Dynamics simulationsYin Wang, Paraskevi Gkeka, Julian E Fuchs, et al.
Pageof 3

Showing results (1-10 of 23) with videos related to

Sort By:
Pageof 3
The Journal of Physical Chemistry. B|December 24, 2009
Interactions of phospholipid bilayers with several classes of amphiphilic alpha-helical peptides: insights from coarse-grained molecular dynamics simulationsParaskevi Gkeka, Lev Sarkisov
The Journal of Physical Chemistry Letters|August 19, 2015
Homogeneous Hydrophobic-Hydrophilic Surface Patterns Enhance Permeation of Nanoparticles through Lipid MembranesParaskevi Gkeka, Lev Sarkisov, Panagiotis Angelikopoulos
Plos Computational Biology|December 5, 2014
Membrane partitioning of anionic, ligand-coated nanoparticles is accompanied by ligand snorkeling, local disordering, and cholesterol depletionParaskevi Gkeka, Panagiotis Angelikopoulos, Lev Sarkisov, et al.
Journal of Chemical Theory and Computation|December 29, 2021
Chasing Collective Variables Using Autoencoders and Biased TrajectoriesZineb Belkacemi, Paraskevi Gkeka, Tony Lelièvre, et al.
Journal of Chemical Theory and Computation|November 21, 2015
Free Energy Calculations Reveal the Origin of Binding Preference for Aminoadamantane Blockers of Influenza A/M2TM PoreParaskevi Gkeka, Stelios Eleftheratos, Antonios Kolocouris, et al.
The Journal of Physical Chemistry. B|October 10, 2014
Exploring a non-ATP pocket for potential allosteric modulation of PI3KαParaskevi Gkeka, Alexandra Papafotika, Savvas Christoforidis, et al.
Nanoscale|October 15, 2016
Self-assembly of anionic, ligand-coated nanoparticles in lipid membranesPanagiotis Angelikopoulos, Lev Sarkisov, Zoe Cournia, et al.
Journal of Chemical Theory and Computation|September 8, 2021
Contact Map Fingerprints of Protein-Ligand Unbinding Trajectories Reveal Mechanisms Determining Residence Times Computed from Scaled Molecular DynamicsMarc Bianciotto, Paraskevi Gkeka, Daria B Kokh, et al.
The Journal of Chemical Physics|July 11, 2023
Autoencoders for dimensionality reduction in molecular dynamics: Collective variable dimension, biasing, and transition statesZineb Belkacemi, Marc Bianciotto, Hervé Minoux, et al.
Biochimica Et Biophysica Acta|August 17, 2016
DPPC-cholesterol phase diagram using coarse-grained Molecular Dynamics simulationsYin Wang, Paraskevi Gkeka, Julian E Fuchs, et al.
Pageof 3