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Plos Biology|August 15, 2025
Teaching right from wrong: Developing a model of early immune educationParsa Ghadermazi, Matthew R Olm
Biorxiv : the Preprint Server for Biology|June 4, 2026
ZipStrain Enables Rapid and Precise Strain-Resolved MetagenomicsParsa Ghadermazi, Joanne B Emerson, Matthew R Olm
Biorxiv : the Preprint Server for Biology|June 4, 2026
IgA Targeting in the Infant Gut Is Modulated by Diet and Increasingly Directed Towards Persistent SpeciesJing Qian, Parsa Ghadermazi, Soren Maret, et al.
Bioinformatics (Oxford, England)|January 12, 2024
Microbial interactions from a new perspective: reinforcement learning reveals new insights into microbiome evolutionParsa Ghadermazi, Siu Hung Joshua Chan
Msystems|October 5, 2021
Predicting Microbiome Metabolism and Interactions through Integrating Multidisciplinary PrinciplesCaleb M Schmidt, Parsa Ghadermazi, Siu Hung Joshua Chan
Cell Host & Microbe|February 15, 2024
Milk to mucus: How B. fragilis colonizes the gutMatthew R Olm, Noel T Mueller
Cell Host & Microbe|November 13, 2025
Mapping the oral microbiome opens links to periodontitisColin D Sempeck, Matthew R Olm
Cell Host & Microbe|October 10, 2024
Hospitalization throws the preterm gut microbiome off-keyJing Qian, Emily N Yeo, Matthew R Olm
The ISME Journal|July 26, 2017
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replicationMatthew R Olm, Christopher T Brown, Brandon Brooks, et al.
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