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Science Advances|April 25, 2025
Growth rate controls the sensitivity of gene regulatory circuitsThomas Julou, Théo Gervais, Daan de Groot, et al.
Plos Computational Biology|January 9, 2015
Identification of constrained cancer driver genes based on mutation timingThomas Sakoparnig, Patrick Fried, Niko Beerenwinkel
Proceedings of the National Academy of Sciences of the United States of America|May 29, 2002
Probabilistic clustering of sequences: inferring new bacterial regulons by comparative genomicsErik van Nimwegen, Mihaela Zavolan, Nikolaus Rajewsky, et al.
Plos Biology|December 3, 2020
Subpopulations of sensorless bacteria drive fitness in fluctuating environmentsThomas Julou, Ludovit Zweifel, Diana Blank, et al.
Molecular and Cellular Biology|June 11, 2014
Transcriptional network analysis in muscle reveals AP-1 as a partner of PGC-1α in the regulation of the hypoxic gene programMario Baresic, Silvia Salatino, Barbara Kupr, et al.
Bioinformatics (Oxford, England)|February 16, 2012
MotEvo: integrated Bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequencesPhil Arnold, Ionas Erb, Mikhail Pachkov, et al.
Nucleic Acids Research|November 28, 2012
SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updatesMikhail Pachkov, Piotr J Balwierz, Phil Arnold, et al.
Methods (San Diego, Calif.)|April 21, 2015
Quantifying the strength of miRNA-target interactionsJeremie Breda, Andrzej J Rzepiela, Rafal Gumienny, et al.
Plos One|October 12, 2020
Using fluorescence flow cytometry data for single-cell gene expression analysis in bacteriaLuca Galbusera, Gwendoline Bellement-Theroue, Arantxa Urchueguia, et al.
Genome Biology|March 19, 2015
BitPhylogeny: a probabilistic framework for reconstructing intra-tumor phylogeniesKe Yuan, Thomas Sakoparnig, Florian Markowetz, et al.
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