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Oncogene|September 21, 2004
Transformation fingerprint: induced STAT3-C, v-Src and Ha-Ras cause small initial changes but similar established profiles in mRNAKeren Paz, Nicholas D Socci, Erik van Nimwegen, et al.
Plos Computational Biology|July 29, 2017
Automated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensorsSaeed Omidi, Mihaela Zavolan, Mikhail Pachkov, et al.
Molecular Biology and Evolution|March 7, 2014
Automated reconstruction of whole-genome phylogenies from short-sequence readsFrederic Bertels, Olin K Silander, Mikhail Pachkov, et al.
The EMBO Journal|November 8, 2022
Temporal and sequential transcriptional dynamics define lineage shifts in corticogenesisTanzila Mukhtar, Jeremie Breda, Manal A Adam, et al.
Proceedings of the National Academy of Sciences of the United States of America|February 13, 2023
Effective bet-hedging through growth rate dependent stabilityDaan H de Groot, Age J Tjalma, Frank J Bruggeman, et al.
Molecular Endocrinology (Baltimore, Md.)|May 17, 2016
The Genomic Context and Corecruitment of SP1 Affect ERRα Coactivation by PGC-1α in Muscle CellsSilvia Salatino, Barbara Kupr, Mario Baresic, et al.
F1000Research|February 25, 2017
The ISMARA clientPanu Artimo, Séverine Duvaud, Mikhail Pachkov, et al.
Plos Biology|December 17, 2021
Genome-wide gene expression noise in Escherichia coli is condition-dependent and determined by propagation of noise through the regulatory networkArantxa Urchueguía, Luca Galbusera, Dany Chauvin, et al.
Molecular Systems Biology|July 1, 2026
E. coli prepares for starvation by dramatically remodeling its proteome in the first hours after loss of nutrientsThéo Gervais, Bjoern Kscheschinski, Michael Mell, et al.
Genome Medicine|November 30, 2017
Predicting cancer type from tumour DNA signaturesKee Pang Soh, Ewa Szczurek, Thomas Sakoparnig, et al.
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