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BMC Bioinformatics|October 14, 2025
Prior knowledge on context-driven DNA fragmentation probabilities can improve de novo genome assembly algorithmsPatrick Pflughaupt, Aleksandr B SahakyanNucleic Acids Research|June 9, 2023
Generalised interrelations among mutation rates drive the genomic compliance of Chargaff's second parity rulePatrick Pflughaupt, Aleksandr B SahakyanScientific Data|August 22, 2024
Quantum mechanical electronic and geometric parameters for DNA k-mers as features for machine learningKairi Masuda, Adib A Abdullah, Patrick Pflughaupt, et al.Nucleic Acids Research|October 23, 2024
Towards the genomic sequence code of DNA fragility for machine learningPatrick Pflughaupt, Adib A Abdullah, Kairi Masuda, et al.BMC Genomics|March 13, 2016
Long genes and genes with multiple splice variants are enriched in pathways linked to cancer and other multigenic diseasesAleksandr B Sahakyan, Shankar BalasubramanianBMC Genomics|January 15, 2017
Single genome retrieval of context-dependent variability in mutation rates for human germlineAleksandr B Sahakyan, Shankar BalasubramanianThe Journal of Physical Chemistry. B|February 13, 2013
Analysis of the contributions of ring current and electric field effects to the chemical shifts of RNA basesAleksandr B Sahakyan, Michele VendruscoloThe Journal of Chemical Physics|July 26, 2013
A geometrical parametrization of C1'-C5' RNA ribose chemical shifts calculated by density functional theoryReynier Suardíaz, Aleksandr B Sahakyan, Michele VendruscoloAngewandte Chemie (International Ed. in English)|June 30, 2016
Structural Analysis using SHALiPE to Reveal RNA G-Quadruplex Formation in Human Precursor MicroRNAChun Kit Kwok, Aleksandr B Sahakyan, Shankar BalasubramanianChembiochem : a European Journal of Chemical Biology|August 7, 2019
A Spontaneous Ring-Opening Reaction Leads to a Repair-Resistant Thymine Oxidation Product in Genomic DNAAleksandr B Sahakyan, Areeb Mahtey, Fumiko Kawasaki, et al.Pageof 3