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Bioinformatics (Oxford, England)|January 5, 2008
NetworkBLAST: comparative analysis of protein networksMaxim Kalaev, Mike Smoot, Trey Ideker, et al.Cancer Research|December 16, 2021
Uncovering Tumorigenesis Circuitry with Combinatorial CRISPRSamson H Fong, Brenton P Munson, Trey IdekerBioinformatics (Oxford, England)|February 1, 2011
PiNGO: a Cytoscape plugin to find candidate genes in biological networksMichael Smoot, Keiichiro Ono, Trey Ideker, et al.Research (Washington, D.C.)|July 3, 2025
Artificial Intelligence-Powered Insights into Polyclonality and Tumor EvolutionHong Zhao, Trey Ideker, Stephen T C WongPlos One|November 12, 2015
Analysis of Matched Tumor and Normal Profiles Reveals Common Transcriptional and Epigenetic Signals Shared across Cancer TypesAndrew M Gross, Jason F Kreisberg, Trey IdekerNucleic Acids Research|June 28, 2005
VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression dataAlbert Hsiao, Trey Ideker, Jerrold M Olefsky, et al.Nature Reviews. Genetics|June 14, 2017
Network propagation: a universal amplifier of genetic associationsLenore Cowen, Trey Ideker, Benjamin J Raphael, et al.Bioinformatics (Oxford, England)|August 10, 2002
Discovering regulatory and signalling circuits in molecular interaction networksTrey Ideker, Owen Ozier, Benno Schwikowski, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|April 7, 2006
Efficient algorithms for detecting signaling pathways in protein interaction networksJacob Scott, Trey Ideker, Richard M Karp, et al.Bioinformatics (Oxford, England)|September 4, 2024
Multi-modal contrastive learning of subcellular organization using DICERami Nasser, Leah V Schaffer, Trey Ideker, et al.Pageof 34