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Nature Aging|January 13, 2025
Somatic mutation as an explanation for epigenetic agingZane Koch, Adam Li, Daniel S Evans, et al.Molecular Cancer Research : MCR|December 24, 2002
Damage recovery pathways in Saccharomyces cerevisiae revealed by genomic phenotyping and interactome mappingThomas J Begley, Ari S Rosenbach, Trey Ideker, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|August 20, 2005
Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction dataRoded Sharan, Trey Ideker, Brian Kelley, et al.Plos Computational Biology|October 13, 2017
Network propagation in the cytoscape cyberinfrastructureDaniel E Carlin, Barry Demchak, Dexter Pratt, et al.Bioinformatics (Oxford, England)|June 12, 2026
Harmonization and Integration of Pharmacogenomics ScreensAleysha T Chen, Marcus R Kelly, Trey Ideker, et al.Nature Methods|September 17, 2013
Network-based stratification of tumor mutationsMatan Hofree, John P Shen, Hannah Carter, et al.Molecular Systems Biology|March 6, 2008
eQED: an efficient method for interpreting eQTL associations using protein networksSilpa Suthram, Andreas Beyer, Richard M Karp, et al.Biorxiv : the Preprint Server for Biology|December 18, 2023
Somatic mutation as an explanation for epigenetic agingZane Koch, Adam Li, Daniel S Evans, et al.Annals of Human Genetics|April 2, 2020
Thousands of missing variants in the UK Biobank are recoverable by genome realignmentTongqiu Jia, Brenton Munson, Hana Lango Allen, et al.Plos Computational Biology|November 8, 2008
Inferring pathway activity toward precise disease classificationEunjung Lee, Han-Yu Chuang, Jong-Won Kim, et al.Pageof 34