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Genome Biology|January 8, 2021
HiDeF: identifying persistent structures in multiscale 'omics dataFan Zheng, She Zhang, Christopher Churas, et al.Molecular Cell|May 23, 2015
The cancer cell map initiative: defining the hallmark networks of cancerNevan J Krogan, Scott Lippman, David A Agard, et al.Nature Communications|July 2, 2025
A genotype-to-drug diffusion model for generation of tailored anti-cancer small moleculesHyunho Kim, Bongsung Bae, Minsu Park, et al.Genome Medicine|September 16, 2018
Exome-wide analysis of bi-allelic alterations identifies a Lynch phenotype in The Cancer Genome AtlasAlexandra R Buckley, Trey Ideker, Hannah Carter, et al.Molecular Systems Biology|October 18, 2007
Network-based classification of breast cancer metastasisHan-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, et al.Bioinformatics (Oxford, England)|September 9, 2010
Nonlinear dimension reduction and clustering by Minimum Curvilinearity unfold neuropathic pain and tissue embryological classesCarlo Vittorio Cannistraci, Timothy Ravasi, Franco Maria Montevecchi, et al.Bioinformatics (Oxford, England)|December 15, 2010
Cytoscape 2.8: new features for data integration and network visualizationMichael E Smoot, Keiichiro Ono, Johannes Ruscheinski, et al.Biorxiv : the Preprint Server for Biology|June 27, 2020
Identifying persistent structures in multiscale 'omics dataFan Zheng, She Zhang, Christopher Churas, et al.Bioinformatics (Oxford, England)|November 1, 2017
ndexr-an R package to interface with the network data exchangeFlorian Auer, Zaynab Hammoud, Alexandr Ishkin, et al.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|December 31, 2023
Tools for assembling the cell: Towards the era of cell structural bioinformaticsMengzhou Hu, Xikun Zhang, Andrew Latham, et al.Pageof 34