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Bioinformatics (Oxford, England)|July 7, 2026
Foundation model enables interpretable open and error-tolerant searching for mass spectrometry-based proteomicsTom Altenburg, Thilo Muth, Patrick van Zalm, et al.Journal of Neurovirology|May 31, 2022
Using plasma proteomics to investigate viral infections of the central nervous system including patients with HIV-associated neurocognitive disordersSaima Ahmed, Arthur Viode, Patrick van Zalm, et al.The Journal of Pediatrics|October 15, 2023
Proteomics-Based Mapping of Bronchopulmonary Dysplasia-Associated Changes in Noninvasively Accessible Oral SecretionsSaima Ahmed, Oludare A Odumade, Patrick van Zalm, et al.Science Advances|March 29, 2023
A simple, time- and cost-effective, high-throughput depletion strategy for deep plasma proteomicsArthur Viode, Patrick van Zalm, Kinga K Smolen, et al.Science Advances|May 24, 2024
Longitudinal plasma proteomic analysis of 1117 hospitalized patients with COVID-19 identifies features associated with severity and outcomesArthur Viode, Kinga K Smolen, Patrick van Zalm, et al.Journal of Proteome Research|October 6, 2022
A Parallelization Strategy for the Time Efficient Analysis of Thousands of LC/MS Runs in High-Performance Computing EnvironmentPatrick van Zalm, Arthur Viodé, Kinga Smolen, et al.Viruses|December 23, 2022
Using CSF Proteomics to Investigate Herpesvirus Infections of the Central Nervous SystemSaima Ahmed, Patrick van Zalm, Emily A Rudmann, et al.Mbio|April 21, 2022
Plasma Proteomic Analysis Distinguishes Severity Outcomes of Human Ebola Virus DiseaseArthur Viodé, Kinga K Smolen, Benoit Fatou, et al.Neonatology|January 24, 2022
Urine Proteomics for Noninvasive Monitoring of Biomarkers in Bronchopulmonary DysplasiaSaima Ahmed, Oludare A Odumade, Patrick van Zalm, et al.Molecular Neurodegeneration|February 3, 2023
Common mouse models of tauopathy reflect early but not late human diseaseKathrin Wenger, Arthur Viode, Christoph N Schlaffner, et al.Pageof 2