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Biorxiv : the Preprint Server for Biology|September 26, 2025
Phage-mediated lysis does not determine Cutibacterium acnes colonization on human skinA Delphine Tripp, Evan B Qu, Ishaq Balogun, et al.Biorxiv : the Preprint Server for Biology|November 19, 2025
High-accuracy SNV calling for bacterial isolates using deep learning with AccuSNVHerui Liao, Arolyn Conwill, Ian Light-Maka, et al.Genome Research|July 6, 2026
High-accuracy SNV calling for bacterial isolates using deep learning with AccuSNVHerui Liao, Arolyn Conwill, Ian Light-Maka, et al.Cell Host & Microbe|April 13, 2023
On-person adaptive evolution of Staphylococcus aureus during treatment for atopic dermatitisFelix M Key, Veda D Khadka, Carolina Romo-González, et al.Nature Genetics|November 15, 2011
Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genesTami D Lieberman, Jean-Baptiste Michel, Mythili Aingaran, et al.Frontiers in Cellular and Infection Microbiology|October 11, 2021
The Skin Microbiome of Patients With Atopic Dermatitis Normalizes Gradually During TreatmentVeda D Khadka, Felix M Key, Carolina Romo-González, et al.Living Journal of Computational Molecular Science|May 13, 2020
A Suite of Tutorials for the WESTPA Rare-Events Sampling Software [Article v1.0]Anthony T Bogetti, Barmak Mostofian, Alex Dickson, et al.Biorxiv : the Preprint Server for Biology|February 19, 2024
De novo mutations mediate phenotypic switching in an opportunistic human lung pathogenAlexandra J Poret, Matthew Schaefers, Christina Merakou, et al.Journal of Chemical Theory and Computation|January 19, 2022
WESTPA 2.0: High-Performance Upgrades for Weighted Ensemble Simulations and Analysis of Longer-Timescale ApplicationsJohn D Russo, She Zhang, Jeremy M G Leung, et al.Nature Communications|July 23, 2025
De novo mutations mediate phenotypic switching in an opportunistic human lung pathogenAlexandra J Poret, Matthew Schaefers, Christina Merakou, et al.Pageof 5