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FEMS Microbiology Letters|January 7, 2020
CRISPR-Cas9-mediated genome editing in vancomycin-resistant Enterococcus faeciumVincent de Maat, Paul B Stege, Mark Dedden, et al.
BMC Genomics|June 23, 2024
Diet-induced changes in the jejunal microbiota of developing broilers reduce the abundance of Enterococcus hirae and Enterococcus faeciumPaul B Stege, Dirkjan Schokker, Frank Harders, et al.
ISME Communications|August 27, 2025
Rationally designed microbial communities in agri-food production systems: from research to marketDirkjan Schokker, Paul B Stege, Marie Duhamel, et al.
Msphere|November 17, 2022
Species-Specific Patterns of Gut Metabolic Modules in Dutch Individuals with Different Dietary HabitsSudarshan A Shetty, Paul B Stege, Joost Hordijk, et al.
FEMS Microbes|May 30, 2024
Colonization of vancomycin-resistant <i>Enterococcus faecium</i> in human-derived colonic epithelium: unraveling the transcriptional dynamics of host-enterococcal interactionsPaul B Stege, Jeffrey M Beekman, Antoni P A Hendrickx, et al.
Environmental Research|June 15, 2026
Use of metagenomics for the detection of pathogens in the environment: A scoping reviewMilou A M Maas, Saskia A Rutjes, Alex Bossers, et al.
Microbiology Spectrum|July 5, 2023
Gut Colonization by ESBL-Producing Escherichia coli in Dogs Is Associated with a Distinct Microbiome and Resistome CompositionPaul B Stege, Joost Hordijk, Arnar K S Sandholt, et al.
Scientific Reports|February 4, 2022
Impact of long-term dietary habits on the human gut resistome in the Dutch populationPaul B Stege, Joost Hordijk, Sudarshan A Shetty, et al.
JHEP Reports : Innovation in Hepatology|October 4, 2021
Ablation of liver <i>Fxr</i> results in an increased colonic mucus barrier in miceNoortje Ijssennagger, Kristel S van Rooijen, Stefanía Magnúsdóttir, et al.
Environment International|June 24, 2025
Towards circular food production systems: Identification of chemical, microbial, and physical food safety hazards in municipal sludge and excess aerobic biomass of the food industryKatja C W van Dongen, Gijs W Spaans, Edwin M Foekema, et al.
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