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BMC Bioinformatics|May 1, 2013
Characterizing the state of the art in the computational assignment of gene function: lessons from the first critical assessment of functional annotation (CAFA)Jesse Gillis, Paul PavlidisF1000Research|August 13, 2013
Progress and challenges in the computational prediction of gene function using networksPaul Pavlidis, Jesse GillisBMC Bioinformatics|September 24, 2009
A methodology for the analysis of differential coexpression across the human lifespanJesse Gillis, Paul PavlidisBioinformatics (Oxford, England)|January 9, 2013
Assessing identity, redundancy and confounds in Gene Ontology annotations over timeJesse Gillis, Paul PavlidisPlos Computational Biology|April 6, 2012
"Guilt by association" is the exception rather than the rule in gene networksJesse Gillis, Paul PavlidisBioinformatics (Oxford, England)|May 10, 2011
The role of indirect connections in gene networks in predicting functionJesse Gillis, Paul PavlidisPlos One|March 3, 2011
The impact of multifunctional genes on "guilt by association" analysisJesse Gillis, Paul PavlidisF1000Research|April 10, 2014
Progress and challenges in the computational prediction of gene function using networks: 2012-2013 updatePaul Pavlidis, Jesse GillisNucleic Acids Research|February 17, 2017
Using predictive specificity to determine when gene set analysis is biologically meaningfulSara Ballouz, Paul Pavlidis, Jesse GillisJournal of Proteomics|February 1, 2014
Bias tradeoffs in the creation and analysis of protein-protein interaction networksJesse Gillis, Sara Ballouz, Paul PavlidisPageof 23