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Bioinformatics (Oxford, England)|December 6, 2011
Integrated annotation and analysis of genetic variants from next-generation sequencing studies with variant toolsF Anthony San Lucas, Gao Wang, Paul Scheet, et al.Bioinformatics (Oxford, England)|December 8, 2006
msHOT: modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspotsGarrett Hellenthal, Matthew StephensPlos Genetics|August 7, 2007
Imputation-based analysis of association studies: candidate regions and quantitative traitsBertrand Servin, Matthew StephensPlos Genetics|December 6, 2008
Practical issues in imputation-based association mappingYongtao Guan, Matthew StephensPlos Genetics|October 8, 2013
Integrated enrichment analysis of variants and pathways in genome-wide association studies indicates central role for IL-2 signaling genes in type 1 diabetes, and cytokine signaling genes in Crohn's diseasePeter Carbonetto, Matthew StephensNature Methods|February 18, 2014
Efficient multivariate linear mixed model algorithms for genome-wide association studiesXiang Zhou, Matthew StephensStatistica Sinica|December 27, 2023
UNIFYING AND GENERALIZING METHODS FOR REMOVING UNWANTED VARIATION BASED ON NEGATIVE CONTROLSDavid Gerard, Matthew StephensJournal of Machine Learning Research : JMLR|November 3, 2023
Empirical Bayes Matrix FactorizationWei Wang, Matthew StephensThe Annals of Applied Statistics|April 12, 2011
USING LINEAR PREDICTORS TO IMPUTE ALLELE FREQUENCIES FROM SUMMARY OR POOLED GENOTYPE DATAXiaoquan Wen, Matthew StephensJournal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America|June 11, 2026
Empirical Bayes Covariance Decomposition, and a Solution to the Multiple Tuning Problem in Sparse PCAJoonsuk Kang, Matthew StephensPageof 29