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The Journal of Physical Chemistry. B
|
June 6, 2015
Molecular Recognition of PPARγ by Kinase Cdk5/p25: Insights from a Combination of Protein-Protein Docking and Adaptive Biasing Force Simulations
Melina Mottin, Paulo C T Souza, Munir S Skaf
Journal of Chemical Information and Modeling
|
May 12, 2025
Creating Coarse-Grained Systems with COBY: Toward Higher Accuracy of Complex Biological Systems
Mikkel D Andreasen, Paulo C T Souza, Birgit Schiøtt, et al.
Methods in Molecular Biology (Clifton, N.J.)
|
August 10, 2019
A Practical View of the Martini Force Field
Bart M H Bruininks, Paulo C T Souza, Siewert J Marrink
Structure (London, England : 1993)
|
April 19, 2023
Transmembrane dimers of type 1 receptors sample alternate configurations: MD simulations using coarse grain Martini 3 versus AlphaFold2 Multimer
Amita R Sahoo, Paulo C T Souza, Zhiyuan Meng, et al.
Advances in Experimental Medicine and Biology
|
February 6, 2026
Bridging Scales: Coarse-Grained Protein Models in Computational Biology
Luís Borges-Araújo, Ilias Patmanidis, Hafez Razmazma, et al.
Bioinformatics Advances
|
March 27, 2025
Challenges in predicting PROTAC-mediated protein-protein interfaces with AlphaFold reveal a general limitation on small interfaces
Gilberto P Pereira, Corentin Gouzien, Paulo C T Souza, et al.
Journal of Chemical Theory and Computation
|
December 28, 2021
Improved Parameterization of Phosphatidylinositide Lipid Headgroups for the Martini 3 Coarse-Grain Force Field
Luís Borges-Araújo, Paulo C T Souza, Fábio Fernandes, et al.
Journal of Chemical Theory and Computation
|
November 16, 2023
CGCompiler: Automated Coarse-Grained Molecule Parametrization via Noise-Resistant Mixed-Variable Optimization
Kai Steffen Stroh, Paulo C T Souza, Luca Monticelli, et al.
Methods in Molecular Biology (Clifton, N.J.)
|
October 30, 2020
Protocol for Simulations of PEGylated Proteins with Martini 3
Fabian Grünewald, Peter C Kroon, Paulo C T Souza, et al.
Biochimica Et Biophysica Acta. Proteins and Proteomics
|
April 26, 2024
Assessing the Martini 3 protein model: A review of its path and potential
Luís Borges-Araújo, Gilberto P Pereira, Mariana Valério, et al.
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Search research articles
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Showing results (1-10 of 66) with videos related to
Sort By:
Page
of 7
The Journal of Physical Chemistry. B
|
June 6, 2015
Molecular Recognition of PPARγ by Kinase Cdk5/p25: Insights from a Combination of Protein-Protein Docking and Adaptive Biasing Force Simulations
Melina Mottin, Paulo C T Souza, Munir S Skaf
Journal of Chemical Information and Modeling
|
May 12, 2025
Creating Coarse-Grained Systems with COBY: Toward Higher Accuracy of Complex Biological Systems
Mikkel D Andreasen, Paulo C T Souza, Birgit Schiøtt, et al.
Methods in Molecular Biology (Clifton, N.J.)
|
August 10, 2019
A Practical View of the Martini Force Field
Bart M H Bruininks, Paulo C T Souza, Siewert J Marrink
Structure (London, England : 1993)
|
April 19, 2023
Transmembrane dimers of type 1 receptors sample alternate configurations: MD simulations using coarse grain Martini 3 versus AlphaFold2 Multimer
Amita R Sahoo, Paulo C T Souza, Zhiyuan Meng, et al.
Advances in Experimental Medicine and Biology
|
February 6, 2026
Bridging Scales: Coarse-Grained Protein Models in Computational Biology
Luís Borges-Araújo, Ilias Patmanidis, Hafez Razmazma, et al.
Bioinformatics Advances
|
March 27, 2025
Challenges in predicting PROTAC-mediated protein-protein interfaces with AlphaFold reveal a general limitation on small interfaces
Gilberto P Pereira, Corentin Gouzien, Paulo C T Souza, et al.
Journal of Chemical Theory and Computation
|
December 28, 2021
Improved Parameterization of Phosphatidylinositide Lipid Headgroups for the Martini 3 Coarse-Grain Force Field
Luís Borges-Araújo, Paulo C T Souza, Fábio Fernandes, et al.
Journal of Chemical Theory and Computation
|
November 16, 2023
CGCompiler: Automated Coarse-Grained Molecule Parametrization via Noise-Resistant Mixed-Variable Optimization
Kai Steffen Stroh, Paulo C T Souza, Luca Monticelli, et al.
Methods in Molecular Biology (Clifton, N.J.)
|
October 30, 2020
Protocol for Simulations of PEGylated Proteins with Martini 3
Fabian Grünewald, Peter C Kroon, Paulo C T Souza, et al.
Biochimica Et Biophysica Acta. Proteins and Proteomics
|
April 26, 2024
Assessing the Martini 3 protein model: A review of its path and potential
Luís Borges-Araújo, Gilberto P Pereira, Mariana Valério, et al.
Page
of 7