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Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|October 26, 2021
From Alpha to Zeta: Identifying Variants and Subtypes of SARS-CoV-2 Via ClusteringAndrew Melnyk, Fatemeh Mohebbi, Sergey Knyazev, et al.Scientific Reports|April 27, 2023
Excess mortality in Ukraine during the course of COVID-19 pandemic in 2020-2021Aleksandr Shishkin, Pema Lhewa, Chen Yang, et al.Journal of Virology|January 1, 2016
Network Analysis of the Chronic Hepatitis C Virome Defines Hypervariable Region 1 Evolutionary Phenotypes in the Context of Humoral Immune ResponsesBrendan A Palmer, Daniel Schmidt-Martin, Zoya Dimitrova, et al.Bioinformatics (Oxford, England)|November 1, 2014
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial poolingPavel Skums, Alexander Artyomenko, Olga Glebova, et al.Royal Society Open Science|September 26, 2025
Clustering-based methodology for comparing multi-characteristic epidemiological dynamics with application to COVID-19 epidemiology in EuropeAlexander Kirpich, Aleksandr Shishkin, Pema Lhewa, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|March 10, 2020
Computational Approaches to Detect Illicit Drug Ads and Find Vendor Communities Within Social Media PlatformsFengpan Zhao, Pavel Skums, Alex Zelikovsky, et al.Plos One|February 17, 2021
Development of an interactive, agent-based local stochastic model of COVID-19 transmission and evaluation of mitigation strategies illustrated for the state of Massachusetts, USAAlexander Kirpich, Vladimir Koniukhovskii, Vladimir Shvartc, et al.Infection and Immunity|May 16, 2019
Delineating Surface Epitopes of Lyme Disease Pathogen Targeted by Highly Protective Antibodies of New Zealand White RabbitsArtem S Rogovskyy, Salvador Eugenio C Caoili, Yurij Ionov, et al.BMC Bioinformatics|July 5, 2012
Efficient error correction for next-generation sequencing of viral ampliconsPavel Skums, Zoya Dimitrova, David S Campo, et al.BMC Genomics|August 2, 2014
Next-generation sequencing reveals large connected networks of intra-host HCV variantsDavid S Campo, Zoya Dimitrova, Lilian Yamasaki, et al.Pageof 6