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Plos Computational Biology|June 15, 2021
Designing microbial communities to maximize the thermodynamic driving force for the production of chemicalsPavlos Stephanos Bekiaris, Steffen KlamtScience Advances|January 21, 2026
COBRA-k: A powerful framework bridging constraint-based and kinetic metabolic modelingPavlos Stephanos Bekiaris, Steffen KlamtNature Communications|August 3, 2023
Network-wide thermodynamic constraints shape NAD(P)H cofactor specificity of biochemical reactionsPavlos Stephanos Bekiaris, Steffen KlamtBMC Bioinformatics|January 16, 2020
Automatic construction of metabolic models with enzyme constraintsPavlos Stephanos Bekiaris, Steffen KlamtPlos One|January 4, 2018
Computational exploration of cis-regulatory modules in rhythmic expression data using the "Exploration of Distinctive CREs and CRMs" (EDCC) and "CRM Network Generator" (CNG) programsPavlos Stephanos Bekiaris, Tobias Tekath, Dorothee Staiger, et al.Bioinformatics (Oxford, England)|September 16, 2022
StrainDesign: a comprehensive Python package for computational design of metabolic networksPhilipp Schneider, Pavlos Stephanos Bekiaris, Axel von Kamp, et al.Bioinformatics (Oxford, England)|December 8, 2021
CNApy: a CellNetAnalyzer GUI in Python for analyzing and designing metabolic networksSven Thiele, Axel von Kamp, Pavlos Stephanos Bekiaris, et al.Biotechnology for Biofuels and Bioproducts|August 5, 2024
Efficiency of acetate-based isopropanol synthesis in Escherichia coli W is controlled by ATP demandRegina Kutscha, Tamara Tomin, Ruth Birner-Gruenberger, et al.Pageof 1