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Plos Computational Biology|June 15, 2021
Designing microbial communities to maximize the thermodynamic driving force for the production of chemicalsPavlos Stephanos Bekiaris, Steffen KlamtScience Advances|January 21, 2026
COBRA-k: A powerful framework bridging constraint-based and kinetic metabolic modelingPavlos Stephanos Bekiaris, Steffen KlamtNature Communications|August 3, 2023
Network-wide thermodynamic constraints shape NAD(P)H cofactor specificity of biochemical reactionsPavlos Stephanos Bekiaris, Steffen KlamtBMC Bioinformatics|January 16, 2020
Automatic construction of metabolic models with enzyme constraintsPavlos Stephanos Bekiaris, Steffen KlamtBioinformatics (Oxford, England)|September 16, 2022
StrainDesign: a comprehensive Python package for computational design of metabolic networksPhilipp Schneider, Pavlos Stephanos Bekiaris, Axel von Kamp, et al.Bioinformatics (Oxford, England)|December 8, 2021
CNApy: a CellNetAnalyzer GUI in Python for analyzing and designing metabolic networksSven Thiele, Axel von Kamp, Pavlos Stephanos Bekiaris, et al.Biotechnology for Biofuels and Bioproducts|August 5, 2024
Efficiency of acetate-based isopropanol synthesis in Escherichia coli W is controlled by ATP demandRegina Kutscha, Tamara Tomin, Ruth Birner-Gruenberger, et al.Plos One|January 4, 2018
Computational exploration of cis-regulatory modules in rhythmic expression data using the "Exploration of Distinctive CREs and CRMs" (EDCC) and "CRM Network Generator" (CNG) programsPavlos Stephanos Bekiaris, Tobias Tekath, Dorothee Staiger, et al.Bio Systems|November 24, 2005
Generalized concept of minimal cut sets in biochemical networksSteffen KlamtMetabolic Engineering|December 15, 2010
Computing complex metabolic intervention strategies using constrained minimal cut setsOliver Hädicke, Steffen KlamtPageof 11