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Bioinformatics (Oxford, England)|February 12, 2021
FASTRAL: improving scalability of phylogenomic analysisPayam Dibaeinia, Shayan Tabe-Bordbar, Tandy WarnowBMC Genomics|July 13, 2023
Integrative modeling of lncRNA-chromatin interaction maps reveals diverse mechanisms of nuclear retentionShayan Tabe-Bordbar, Saurabh SinhaFrontiers in Computational Neuroscience|May 21, 2016
Computational Analysis of the Hypothalamic Control of Food IntakeShayan Tabe-Bordbar, Thomas J AnastasioBiotechnology Letters|October 1, 2013
Finding elementary flux modes in metabolic networks based on flux balance analysis and flux coupling analysis: application to the analysis of Escherichia coli metabolismShayan Tabe-Bordbar, Sayed-Amir MarashiMethods in Molecular Biology (Clifton, N.J.)|December 8, 2020
Revisiting Evaluation of Multiple Sequence Alignment MethodsTandy WarnowPlos Currents|June 12, 2015
Concatenation Analyses in the Presence of Incomplete Lineage SortingTandy WarnowPlos Currents|March 31, 2012
Standard maximum likelihood analyses of alignments with gaps can be statistically inconsistentTandy WarnowMethods in Molecular Biology (Clifton, N.J.)|October 31, 2013
Large-scale multiple sequence alignment and tree estimation using SATéKevin Liu, Tandy WarnowPhilosophical Transactions of the Royal Society of London. Series B, Biological Sciences|August 22, 2022
Recent progress on methods for estimating and updating large phylogeniesPaul Zaharias, Tandy WarnowBioinformatics Advances|March 27, 2023
WITCH-NG: efficient and accurate alignment of datasets with sequence length heterogeneityBaqiao Liu, Tandy WarnowPageof 15