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NAR Genomics and Bioinformatics|November 5, 2024
Faster and more accurate assessment of differential transcript expression with Gibbs sampling and edgeR v4Pedro L Baldoni, Lizhong Chen, Gordon K SmythBiometrics|May 14, 2019
Improved detection of epigenomic marks with mixed-effects hidden Markov modelsPedro L Baldoni, Naim U Rashid, Joseph G IbrahimBiometrics|April 16, 2021
Efficient detection and classification of epigenomic changes under multiple conditionsPedro L Baldoni, Naim U Rashid, Joseph G IbrahimScientific Reports|May 20, 2026
Cross-generational transcriptomic effects of alcohol use disorder in third generation offspringShirley Y Hill, Gregg E Homanics, Sean Farris, et al.American Journal of Epidemiology|January 28, 2021
On the Use of Regression Calibration in a Complex Sampling Design With Application to the Hispanic Community Health Study/Study of LatinosPedro L Baldoni, Daniela Sotres-Alvarez, Thomas Lumley, et al.Nucleic Acids Research|December 8, 2025
Dividing out quantification uncertainty enables assessment of differential transcript usage with limma and edgeRPedro L Baldoni, Lizhong Chen, Mengbo Li, et al.Nucleic Acids Research|January 23, 2025
edgeR v4: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and larger datasetsYunshun Chen, Lizhong Chen, Aaron T L Lun, et al.Biometrics|February 16, 2024
Quantifying the HIV reservoir with dilution assays and deep viral sequencingSarah C Lotspeich, Brian D Richardson, Pedro L Baldoni, et al.Statistics in Medicine|May 15, 2023
Comparisons of statistical methods for handling attrition in a follow-up visit with complex survey samplingJianwen Cai, Donglin Zeng, Haolin Li, et al.Genome Biology|February 19, 2026
A comprehensive evaluation of long-read de novo transcriptome assemblyFeng Yan, Pedro L Baldoni, James Lancaster, et al.Pageof 3