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Bioinformatics (Oxford, England)|May 10, 2015
INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA- and 4sU-seq time course experimentsStefano de Pretis, Theresia Kress, Marco J Morelli, et al.
Molecular & Cellular Proteomics : MCP|November 22, 2007
Statistical similarities between transcriptomics and quantitative shotgun proteomics dataNorman Pavelka, Marjorie L Fournier, Selene K Swanson, et al.
Genome Medicine|February 19, 2015
DOTS-Finder: a comprehensive tool for assessing driver genes in cancer genomesGiorgio Em Melloni, Alessandro Ge Ogier, Stefano de Pretis, et al.
Nature Communications|September 4, 2024
Nanodynamo quantifies subcellular RNA dynamics revealing extensive coupling between steps of the RNA life cycleLucia Coscujuela Tarrero, Valeria Famà, Giacomo D'Andrea, et al.
Nucleic Acids Research|March 12, 2024
Comprehensive transcriptome analysis reveals altered mRNA splicing and post-transcriptional changes in the aged mouse brainNisha Hemandhar Kumar, Verena Kluever, Emanuel Barth, et al.
BMC Bioinformatics|February 11, 2016
LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancerGiorgio E M Melloni, Stefano de Pretis, Laura Riva, et al.
BMC Bioinformatics|September 30, 2015
methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics dataKamal Kishore, Stefano de Pretis, Ryan Lister, et al.
Journal of the American Chemical Society|November 13, 2015
Mapping the Topography of a Protein Energy LandscapeRichard D Hutton, James Wilkinson, Mauro Faccin, et al.
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