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Bioinformatics (Oxford, England)|March 16, 2019
A Bayesian model for single cell transcript expression analysis on MERFISH dataJohannes Köster, Myles Brown, X Shirley LiuBioinformatics (Oxford, England)|June 18, 2005
A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequencesWei Li, Clifford A Meyer, X Shirley LiuMolecular Endocrinology (Baltimore, Md.)|August 30, 2012
Minireview: applications of next-generation sequencing on studies of nuclear receptor regulation and functionClifford A Meyer, Qianzi Tang, X Shirley LiuNature Biotechnology|July 9, 2002
An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experimentsX Shirley Liu, Douglas L Brutlag, Jun S LiuGenome Biology|November 1, 2015
Network analysis of gene essentiality in functional genomics experimentsPeng Jiang, Hongfang Wang, Wei Li, et al.Biometrics|September 25, 2007
A flexible and powerful bayesian hierarchical model for ChIP-Chip experimentsRaphael Gottardo, Wei Li, W Evan Johnson, et al.Genes & Development|August 17, 2014
Active enhancers are delineated de novo during hematopoiesis, with limited lineage fidelity among specified primary blood cellsAnnouck Luyten, Chongzhi Zang, X Shirley Liu, et al.Genome Research|April 16, 2008
A high-resolution map of nucleosome positioning on a fission yeast centromereJun S Song, Xingkun Liu, X Shirley Liu, et al.Nucleic Acids Research|July 20, 2006
Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten speciesYong Zhang, X Shirley Liu, Qing-Rong Liu, et al.Bioinformatics (Oxford, England)|August 20, 2009
CEAS: cis-regulatory element annotation systemHyunjin Shin, Tao Liu, Arjun K Manrai, et al.Pageof 196