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Bioinformatics (Oxford, England)|November 19, 2024
DeepDR: a deep learning library for drug response predictionZhengxiang Jiang, Pengyong Li
Plos Computational Biology|August 4, 2021
Deep geometric representations for modeling effects of mutations on protein-protein binding affinityXianggen Liu, Yunan Luo, Pengyong Li, et al.
Bioinformatics (Oxford, England)|August 12, 2025
RNA language model and Graph attention network for RNA and small molecule binding sites predictionSaisai Sun, Jianyi Yang, Lin Gao, et al.
Bioinformatics (Oxford, England)|June 30, 2026
Enhancing Cross-Context Generalization in Drug Perturbation Prediction with a Multimodal Conditional Diffusion FrameworkYanjie Ma, Kang Du, Yan Li, et al.
ACS Applied Materials & Interfaces|February 19, 2019
In Situ Growth of a Cationic Polymer from the N-Terminus of Glucose Oxidase To Regulate H<sub>2</sub>O<sub>2</sub> Generation for Cancer Starvation and H<sub>2</sub>O<sub>2</sub> TherapyHanjun Hao, Mengmeng Sun, Pengyong Li, et al.
Bioinformatics (Oxford, England)|October 15, 2025
ZeroGEN: leveraging language models for zero-shot ligand design from protein sequencesYangyang Chen, Zixu Wang, Pengyong Li, et al.
Biomacromolecules|October 24, 2018
Site-Selective in Situ Growth-Induced Self-Assembly of Protein-Polymer Conjugates into pH-Responsive Micelles for Tumor Microenvironment Triggered Fluorescence ImagingPengyong Li, Mengmeng Sun, Zhikun Xu, et al.
Briefings in Bioinformatics|April 11, 2024
Improving drug response prediction via integrating gene relationships with deep learningPengyong Li, Zhengxiang Jiang, Tianxiao Liu, et al.
World Journal of Surgical Oncology|April 8, 2025
GINS1 facilitates the development of lung adenocarcinoma via Wnt/β-catenin activationLuyuan Ma, Rongyang Li, Pengyong Li, et al.
Communications Biology|February 17, 2026
De novo covalent drug generation with enhanced drug-likeness and safetyWenbo Zhang, Tianxiao Liu, Xiaoying Dong, et al.
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