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BMC Bioinformatics|April 28, 2012
Maximum expected accuracy structural neighbors of an RNA secondary structurePeter Clote, Feng Lou, William A LorenzNucleic Acids Research|May 29, 2015
RNAiFold 2.0: a web server and software to design custom and Rfam-based RNA moleculesJuan Antonio Garcia-Martin, Ivan Dotu, Peter CloteJournal of Bioinformatics and Computational Biology|April 23, 2013
RNAiFOLD: a constraint programming algorithm for RNA inverse folding and molecular designJuan Antonio Garcia-Martin, Peter Clote, Ivan DotuNucleic Acids Research|June 18, 2009
RNAmutants: a web server to explore the mutational landscape of RNA secondary structuresJerome Waldispühl, Srinivas Devadas, Bonnie Berger, et al.Plos Computational Biology|August 9, 2008
Efficient algorithms for probing the RNA mutation landscapeJérôme Waldispühl, Srinivas Devadas, Bonnie Berger, et al.Journal of Bioinformatics and Computational Biology|September 29, 2009
Asymptotics of canonical and saturated RNA secondary structuresPeter Clote, Evangelos Kranakis, Danny Krizanc, et al.RNA (New York, N.Y.)|April 21, 2005
Structural RNA has lower folding energy than random RNA of the same dinucleotide frequencyPeter Clote, Fabrizio Ferré, Evangelos Kranakis, et al.Nucleic Acids Research|June 15, 2007
DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similaritiesF Ferrè, Y Ponty, W A Lorenz, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|March 2, 2011
On lattice protein structure prediction revisitedIvan Dotu, Manuel Cebrián, Pascal Van Hentenryck, et al.BMC Bioinformatics|December 15, 2016
New tools to analyze overlapping coding regionsAmir H Bayegan, Juan Antonio Garcia-Martin, Peter ClotePageof 5