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Frontiers in Molecular Biosciences|September 10, 2021
Coarse-Grained Modeling and Molecular Dynamics Simulations of Ca2+-CalmodulinJules Nde, Pengzhi Zhang, Jacob C Ezerski, et al.Nature Chemical Biology|September 11, 2025
Real-time imaging of protein microenvironment changes in cells with rotor-based fluorescent amino acidsShudan Yang, Shikai Jin, Mengxi Zhang, et al.Biorxiv : the Preprint Server for Biology|November 1, 2024
Real-Time Visualization of Protein Microenvironment Changes with High Spatial Resolution in Live Cells via Site-Specific Incorporation of Rotor-Based Fluorescent Noncanonical Amino AcidsShudan Yang, Shikai Jin, Mengxi Zhang, et al.Proceedings of the National Academy of Sciences of the United States of America|March 20, 2025
Energy landscape analysis of the development of the chromosome structure across the cell cycleVinícius G Contessoto, Antonio B Oliveira, Sumitabha Brahmachari, et al.Nature Communications|January 19, 2023
Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cuesVinícius G Contessoto, Olga Dudchenko, Erez Lieberman Aiden, et al.Proceedings of the National Academy of Sciences of the United States of America|August 1, 2022
Computationally exploring the mechanism of bacteriophage T7 gp4 helicase translocating along ssDNAShikai Jin, Carlos Bueno, Wei Lu, et al.Nature Communications|November 24, 2020
Surveying biomolecular frustration at atomic resolutionMingchen Chen, Xun Chen, Nicholas P Schafer, et al.Proceedings of the National Academy of Sciences of the United States of America|September 14, 2004
Domain swapping is a consequence of minimal frustrationSichun Yang, Samuel S Cho, Yaakov Levy, et al.Elife|October 13, 2020
Exploring chromosomal structural heterogeneity across multiple cell linesRyan R Cheng, Vinicius G Contessoto, Erez Lieberman Aiden, et al.The Journal of Physical Chemistry. B|December 30, 2021
Examining the Ensembles of Amyloid-β Monomer Variants and Their Propensities to Form Fibers Using an Energy Landscape Visualization MethodMurilo N Sanches, Kaitlin Knapp, Antonio B Oliveira, et al.Pageof 23