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Proceedings of the National Academy of Sciences of the United States of America|August 29, 2019
Assemblies of calcium/calmodulin-dependent kinase II with actin and their dynamic regulation by calmodulin in dendritic spinesQian Wang, Mingchen Chen, Nicholas P Schafer, et al.Nature Communications|December 5, 2025
Quantum simulation of charge and exciton transfer in multi-mode models using engineered reservoirsVisal So, Midhuna Duraisamy Suganthi, Mingjian Zhu, et al.Bioinformatics (Oxford, England)|March 15, 2021
FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulationsAtilio O Rausch, Maria I Freiberger, Cesar O Leonetti, et al.Nature Communications|September 16, 2022
Unleashing the potential of noncanonical amino acid biosynthesis to create cells with precision tyrosine sulfationYuda Chen, Shikai Jin, Mengxi Zhang, et al.Nucleic Acids Research|April 8, 2024
Frustraevo: a web server to localize and quantify the conservation of local energetic frustration in protein familiesR Gonzalo Parra, Maria I Freiberger, Miriam Poley-Gil, et al.The Journal of Biological Chemistry|August 7, 2022
An intrinsically disordered transcription activation domain increases the DNA binding affinity and reduces the specificity of NFκB p50/RelAHannah E R Baughman, Dominic Narang, Wei Chen, et al.Plos Computational Biology|February 12, 2021
OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulationsWei Lu, Carlos Bueno, Nicholas P Schafer, et al.Nucleic Acids Research|October 6, 2020
The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genomeVinícius G Contessoto, Ryan R Cheng, Arya Hajitaheri, et al.Nucleic Acids Research|May 9, 2020
AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapesShikai Jin, Vinicius G Contessoto, Mingchen Chen, et al.Nature Communications|December 16, 2023
Local energetic frustration conservation in protein families and superfamiliesMaria I Freiberger, Victoria Ruiz-Serra, Camila Pontes, et al.Pageof 23