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Science (New York, N.Y.)|December 23, 2006
Relating three-dimensional structures to protein networks provides evolutionary insightsPhilip M Kim, Long J Lu, Yu Xia, et al.Science Signaling|November 4, 2010
Rewiring of transcriptional regulatory networks: hierarchy, rather than connectivity, better reflects the importance of regulatorsNitin Bhardwaj, Philip M Kim, Mark B GersteinProceedings of the National Academy of Sciences of the United States of America|December 14, 2007
Positive selection at the protein network periphery: evaluation in terms of structural constraints and cellular contextPhilip M Kim, Jan O Korbel, Mark B GersteinPlos Computational Biology|June 13, 2009
Integrated assessment of genomic correlates of protein evolutionary rateYu Xia, Eric A Franzosa, Mark B GersteinScience Signaling|July 30, 2009
Understanding modularity in molecular networks requires dynamicsRoger P Alexander, Philip M Kim, Thierry Emonet, et al.BMC Bioinformatics|May 24, 2007
Hinge Atlas: relating protein sequence to sites of structural flexibilitySamuel C Flores, Long J Lu, Julie Yang, et al.Trends in Biochemical Sciences|June 23, 2007
Comparing classical pathways and modern networks: towards the development of an edge ontologyLong J Lu, Andrea Sboner, Yuanpeng J Huang, et al.Journal of Molecular Biology|January 18, 2006
Integrated prediction of the helical membrane protein interactome in yeastYu Xia, Long J Lu, Mark GersteinCurrent Opinion in Structural Biology|May 31, 2008
The current excitement about copy-number variation: how it relates to gene duplications and protein familiesJan O Korbel, Philip M Kim, Xueying Chen, et al.Plos Computational Biology|January 22, 2011
Measuring the evolutionary rewiring of biological networksChong Shou, Nitin Bhardwaj, Hugo Y K Lam, et al.Pageof 331