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Plos Computational Biology|August 15, 2014
Quantifying the role of population subdivision in evolution on rugged fitness landscapesAnne-Florence Bitbol, David J SchwabBiophysical Journal|March 13, 2015
Fundamental constraints on the abundances of chemotaxis proteinsAnne-Florence Bitbol, Ned S WingreenPhysical Review Letters|December 3, 2021
Toward a Universal Model for Spatially Structured PopulationsLoïc Marrec, Irene Lamberti, Anne-Florence BitbolPhysical Review. E|March 16, 2024
Evolution of cooperation in deme-structured populations on graphsAlix Moawad, Alia Abbara, Anne-Florence BitbolPlos Computational Biology|October 15, 2019
Phylogenetic correlations can suffice to infer protein partners from sequencesGuillaume Marmier, Martin Weigt, Anne-Florence BitbolPhysical Review Letters|March 27, 2026
Out-of-Equilibrium Selection Pressure Enhances Inference from Protein Sequence DataNicola Dietler, Cyril Malbranke, Anne-Florence BitbolBioinformatics (Oxford, England)|June 13, 2025
ProtMamba: a homology-aware but alignment-free protein state space modelDamiano Sgarbossa, Cyril Malbranke, Anne-Florence BitbolEvolution; International Journal of Organic Evolution|March 4, 2025
Impact of complex spatial population structure on early and long-term adaptation in rugged fitness landscapesRichard Servajean, Arthur Alexandre, Anne-Florence BitbolProceedings of the National Academy of Sciences of the United States of America|June 24, 2024
Pairing interacting protein sequences using masked language modelingUmberto Lupo, Damiano Sgarbossa, Anne-Florence BitbolNature Communications|October 22, 2022
Protein language models trained on multiple sequence alignments learn phylogenetic relationshipsUmberto Lupo, Damiano Sgarbossa, Anne-Florence BitbolPageof 9