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Biorxiv : the Preprint Server for Biology
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July 17, 2025
Using Time Dependent Rate Analysis to Evaluate the Quality of Machine Learned Reaction Coordinates for Biasing and Computing Kinetics
Nicodemo Mazzaferro, Suemin Lee, Pilar Cossio, et al.
The Journal of Physical Chemistry. B
|
October 8, 2025
Using Time Dependent Rate Analysis to Evaluate the Quality of Machine Learned Reaction Coordinates for Biasing and Computing Kinetics
Nicodemo Mazzaferro, Suemin Lee, Pilar Cossio, et al.
Biorxiv : the Preprint Server for Biology
|
January 23, 2026
Cryo-electron microscopy ensemble optimization using individual particles and physical constraints
David Silva-Sánchez, Erik H Thiede, Roy R Lederman, et al.
Microscopy (Oxford, England)
|
July 23, 2018
Bayesian inference of rotor ring stoichiometry from electron microscopy images of archaeal ATP synthase
Pilar Cossio, Matteo Allegretti, Florian Mayer, et al.
Iucrj
|
January 17, 2025
A new statistical metric for robust target detection in cryo-EM using 2D template matching
Kexin Zhang, Pilar Cossio, Aaditya V Rangan, et al.
Computational and Structural Biotechnology Journal
|
March 9, 2023
Connection between MHC class II binding and aggregation propensity: The antigenic peptide 10 of <i>Paracoccidioides brasiliensis</i> as a benchmark study
Rodrigo Ochoa, Thyago R Cardim-Pires, Ricardo Sant'Anna, et al.
Plos Computational Biology
|
November 17, 2010
Exploring the universe of protein structures beyond the Protein Data Bank
Pilar Cossio, Antonio Trovato, Fabio Pietrucci, et al.
BMC Bioinformatics
|
December 30, 2020
An automated protocol for modelling peptide substrates to proteases
Rodrigo Ochoa, Mikhail Magnitov, Roman A Laskowski, et al.
FEBS Letters
|
October 11, 2021
Cardiolipin prevents pore formation in phosphatidylglycerol bacterial membrane models
Cristian Rocha-Roa, Juan David Orjuela, Chad Leidy, et al.
Journal of Structural Biology: X
|
August 4, 2020
Validation tests for cryo-EM maps using an independent particle set
Sebastian Ortiz, Luka Stanisic, Boris A Rodriguez, et al.
Page
of 7
Search research articles
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Showing results (31-40 of 62) with videos related to
Sort By:
Page
of 7
Biorxiv : the Preprint Server for Biology
|
July 17, 2025
Using Time Dependent Rate Analysis to Evaluate the Quality of Machine Learned Reaction Coordinates for Biasing and Computing Kinetics
Nicodemo Mazzaferro, Suemin Lee, Pilar Cossio, et al.
The Journal of Physical Chemistry. B
|
October 8, 2025
Using Time Dependent Rate Analysis to Evaluate the Quality of Machine Learned Reaction Coordinates for Biasing and Computing Kinetics
Nicodemo Mazzaferro, Suemin Lee, Pilar Cossio, et al.
Biorxiv : the Preprint Server for Biology
|
January 23, 2026
Cryo-electron microscopy ensemble optimization using individual particles and physical constraints
David Silva-Sánchez, Erik H Thiede, Roy R Lederman, et al.
Microscopy (Oxford, England)
|
July 23, 2018
Bayesian inference of rotor ring stoichiometry from electron microscopy images of archaeal ATP synthase
Pilar Cossio, Matteo Allegretti, Florian Mayer, et al.
Iucrj
|
January 17, 2025
A new statistical metric for robust target detection in cryo-EM using 2D template matching
Kexin Zhang, Pilar Cossio, Aaditya V Rangan, et al.
Computational and Structural Biotechnology Journal
|
March 9, 2023
Connection between MHC class II binding and aggregation propensity: The antigenic peptide 10 of <i>Paracoccidioides brasiliensis</i> as a benchmark study
Rodrigo Ochoa, Thyago R Cardim-Pires, Ricardo Sant'Anna, et al.
Plos Computational Biology
|
November 17, 2010
Exploring the universe of protein structures beyond the Protein Data Bank
Pilar Cossio, Antonio Trovato, Fabio Pietrucci, et al.
BMC Bioinformatics
|
December 30, 2020
An automated protocol for modelling peptide substrates to proteases
Rodrigo Ochoa, Mikhail Magnitov, Roman A Laskowski, et al.
FEBS Letters
|
October 11, 2021
Cardiolipin prevents pore formation in phosphatidylglycerol bacterial membrane models
Cristian Rocha-Roa, Juan David Orjuela, Chad Leidy, et al.
Journal of Structural Biology: X
|
August 4, 2020
Validation tests for cryo-EM maps using an independent particle set
Sebastian Ortiz, Luka Stanisic, Boris A Rodriguez, et al.
Page
of 7