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Bioinformatics Advances|October 20, 2023
Identification of disease modules using higher-order network structurePramesh Singh, Hannah Kuder, Anna RitzPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|December 10, 2021
Reconciling Signaling Pathway Databases with Network TopologiesTobias Rubel, Pramesh Singh, Anna RitzNucleic Acids Research|May 26, 2021
Graphery: interactive tutorials for biological network algorithmsHeyuan Zeng, Jinbiao Zhang, Gabriel A Preising, et al.Scientific Reports|October 4, 2019
Reduced network extremal ensemble learning (RenEEL) scheme for community detection in complex networksJiahao Guo, Pramesh Singh, Kevin E BasslerBioinformatics (Oxford, England)|August 23, 2025
An interpretable alphabet for local protein structure search based on amino acid neighborhoodsSaba Zerefa, Jesse Cool, Pramesh Singh, et al.Bioinformatics Advances|August 4, 2025
GRPhIN: graphlet characterization of regulatory and physical interaction networksAltaf Barelvi, Oliver Anderson, Anna RitzBMC Bioinformatics|December 3, 2019
Integrating protein localization with automated signaling pathway reconstructionIbrahim Youssef, Jeffrey Law, Anna RitzIEEE/ACM Transactions on Computational Biology and Bioinformatics|October 10, 2017
Pathway Analysis with Signaling HypergraphsAnna Ritz, Brendan Avent, T M MuraliJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|March 2, 2023
Growing Directed Acyclic Graphs: Optimization Functions for Pathway Reconstruction AlgorithmsTunç Başar Köse, Jiarong Li, Anna RitzBioinformatics (Oxford, England)|April 10, 2010
Structural variation analysis with strobe readsAnna Ritz, Ali Bashir, Benjamin J RaphaelPageof 4